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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS16630 and ABI39_RS16635 are separated by 238 nucleotides
ABI39_RS16635 and ABI39_RS16640 are separated by 121 nucleotides
ABI39_RS16640 and ABI39_RS16645 are separated by 27 nucleotides
ABI39_RS16645 and ABI39_RS16650 are separated by 17 nucleotides
ABI39_RS16630: ABI39_RS16630 - multidrug effflux MFS transporter, at 4,225,996 to 4,227,180
_RS16630
ABI39_RS16635: ABI39_RS16635 - AraC family transcriptional regulator, at 4,227,419 to 4,228,270
_RS16635
ABI39_RS16640: ABI39_RS16640 - DUF4251 domain-containing protein, at 4,228,392 to 4,228,985
_RS16640
ABI39_RS16645: ABI39_RS16645 - hypothetical protein, at 4,229,013 to 4,229,231
_RS16645
ABI39_RS16650: ABI39_RS16650 - efflux RND transporter permease subunit, at 4,229,249 to 4,229,794
_RS16650
Group
Condition
ABI39
_RS16630
ABI39
_RS16635
ABI39
_RS16640
ABI39
_RS16645
ABI39
_RS16650
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
+0.3
-2.5
N.D.
+0.4
carbon source
amylopectin from maize (C)
-0.1
+0.1
-0.4
N.D.
-1.3
carbon source
N-acetylneuraminic (C)
-0.1
-0.1
-1.0
N.D.
-0.1
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
-0.9
N.D.
+0.6
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.3
+0.3
-0.8
N.D.
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.6
+0.3
-1.1
N.D.
+0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.5
+0.2
-0.5
N.D.
-0.2
carbon source
D-Glucose 2.5 mg/ml (C)
-0.1
+0.3
-0.6
N.D.
+0.5
carbon source
Amylopectin from Potato (C)
+0.7
+0.1
-0.7
N.D.
-0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.2
+0.3
-0.9
N.D.
+0.4
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
-1.0
N.D.
+0.4
carbon source
(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
+0.0
+0.2
-0.6
N.D.
+0.6
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.2
-0.5
+0.9
N.D.
-0.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.6
-0.1
-0.9
N.D.
+0.7
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.0
+0.4
-0.6
N.D.
+0.6
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.1
+0.2
-0.8
N.D.
+1.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
+0.5
-0.8
N.D.
+0.6
carbon source
NAG 2.5 mg/ml (C)
-0.2
+0.3
-0.3
N.D.
+0.8
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.2
+0.2
-0.2
N.D.
+0.9
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
+0.2
+1.3
N.D.
-0.3
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.4
+0.6
N.D.
+0.4
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.1
+0.2
+0.4
N.D.
+0.7
carbon source
Galactan from Potato (C)
+0.5
-0.0
+0.9
N.D.
+0.1
carbon source
NAG 2.5 mg/ml (C)
+0.2
+0.3
+0.1
N.D.
+0.8
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.3
-0.0
N.D.
+1.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.2
+0.3
N.D.
+0.9
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.1
+0.3
+1.8
N.D.
-0.7
carbon source
Galactan from Potato (C)
+0.7
+0.1
+1.3
N.D.
-0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.1
+0.7
+0.9
N.D.
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.6
+0.6
+1.7
N.D.
-0.5
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