Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS16495 and ABI39_RS16500 are separated by 272 nucleotidesABI39_RS16500 and ABI39_RS16505 are separated by 158 nucleotidesABI39_RS16505 and ABI39_RS16510 are separated by 0 nucleotidesABI39_RS16510 and ABI39_RS16515 are separated by 10 nucleotides ABI39_RS16495: ABI39_RS16495 - phosphoserine phosphatase SerB, at 4,186,697 to 4,187,929 _RS16495 ABI39_RS16500: ABI39_RS16500 - redoxin domain-containing protein, at 4,188,202 to 4,188,696 _RS16500 ABI39_RS16505: ABI39_RS16505 - HAD family phosphatase, at 4,188,855 to 4,189,475 _RS16505 ABI39_RS16510: ABI39_RS16510 - YjgP/YjgQ family permease, at 4,189,476 to 4,190,648 _RS16510 ABI39_RS16515: ABI39_RS16515 - tRNA guanosine(34) transglycosylase Tgt, at 4,190,659 to 4,191,789 _RS16515
Group Condition ABI39_RS16495 ABI39_RS16500 ABI39_RS16505 ABI39_RS16510 ABI39_RS16515
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.1 +1.1 +0.1 N.D. -2.5
carbon source D-Mannose (C) -0.6 -0.7 -0.1 N.D. -1.1
carbon source D-Raffinose (C) -0.7 -1.5 +0.1 N.D. +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.8 +0.9 +0.2 N.D. -1.0
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.6 +0.3 -0.2 N.D. -2.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 +0.2 +0.5 N.D. -2.9
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 -0.1 +0.2 N.D. -1.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.8 +0.1 N.D. -1.9
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 +0.4 +0.3 N.D. -1.7
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.8 +0.7 +0.1 N.D. -2.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 +0.5 -0.1 N.D. -1.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.7 +0.6 -0.0 N.D. -1.6
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.5 +0.3 +0.3 N.D. -1.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.9 +0.6 +0.1 N.D. -1.6
carbon source Beta-Lactose 2.5 mg/ml (C) +1.0 +0.3 -0.0 N.D. -1.4
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.4 +0.7 +0.4 N.D. -1.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +1.1 +0.3 N.D. -1.2
carbon source Beta-Lactose 2.5 mg/ml (C) +1.3 +0.4 -0.0 N.D. -1.2
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.2 +0.6 +0.8 N.D. -1.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.3 +1.2 +0.6 N.D. -1.4
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.4 +1.0 +0.5 N.D. -1.0
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.8 +0.5 +0.3 N.D. -0.8
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.5 +0.7 +0.6 N.D. -0.9
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.3 +1.2 +0.3 N.D. -1.0
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.5 +0.9 +0.5 N.D. -1.0
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.6 +0.8 +0.5 N.D. -1.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.4 +1.0 +0.5 N.D. -0.8
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.5 +1.0 +0.5 N.D. -0.7
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +1.0 +1.2 +0.6 N.D. -1.0
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.7 +0.8 +0.5 N.D. +0.5
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ABI39_RS16495
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ABI39_RS16500
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ABI39_RS16510
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