Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS15270 and ABI39_RS15275 are separated by 60 nucleotidesABI39_RS15275 and ABI39_RS15280 overlap by 18 nucleotidesABI39_RS15280 and ABI39_RS15285 are separated by 198 nucleotidesABI39_RS15285 and ABI39_RS15290 are separated by 33 nucleotides ABI39_RS15270: ABI39_RS15270 - type I pullulanase, at 3,954,287 to 3,956,281 _RS15270 ABI39_RS15275: ABI39_RS15275 - mannonate dehydratase, at 3,956,342 to 3,957,520 _RS15275 ABI39_RS15280: ABI39_RS15280 - patatin-like phospholipase domain-containing protein, at 3,957,503 to 3,959,722 _RS15280 ABI39_RS15285: ABI39_RS15285 - 3'-5' exonuclease, at 3,959,921 to 3,960,409 _RS15285 ABI39_RS15290: ABI39_RS15290 - YigZ family protein, at 3,960,443 to 3,961,045 _RS15290
Group Condition ABI39_RS15270 ABI39_RS15275 ABI39_RS15280 ABI39_RS15285 ABI39_RS15290
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.9 -4.8 -0.3 +0.2 +0.3
carbon source Xylan from Beechwood (C) -0.8 -5.0 -0.0 +0.1 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -1.1 -3.8 -0.1 +0.2 +0.3
carbon source Xylan from Beechwood (C) -0.9 -3.9 +0.1 +0.3 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.0 -0.7 -0.1 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 -0.1 -0.6 -0.1 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.0 -1.1 +0.1 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.1 -0.4 +0.1 -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.2 -0.3 +0.5 -0.6
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.5 -0.1 -0.1 +0.0
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.1 +0.2 +0.1 +0.3 -0.6
carbon source amylopectin from maize (C) +0.3 -0.2 -0.1 +0.3 -0.3
carbon source Galactose 1-phosphate dipotassium salt (C) -0.1 -0.1 +0.4 -0.2 +0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.2 +0.3 -0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.4 -0.2 +0.1 -0.0 +0.3
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.1 +0.3 -0.1 +0.2 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +0.2 +0.3 -0.1 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.2 +0.2 +0.5
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 -0.1 +0.2 -0.0 +0.9
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.5 -0.0 +0.1 -0.1 +0.6
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.5 -0.1 -0.0 +0.4 +0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.4 +0.1 -0.0 +0.1 +0.8
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.5 +0.2 +0.2 +0.0 +0.5
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.1 +0.3 +0.1 +0.3 +0.7
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.7 +0.3 +0.0 -0.0 +0.7
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +0.4 +0.3 +0.5 +0.6
carbon source Galactan from Potato (C) +0.6 +0.3 +0.3 +0.1 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.5 +0.3 +0.1 +1.2
carbon source Galactan from Potato (C) +0.6 +0.6 +0.3 +0.7 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.8 +0.4 +0.6 +0.8
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ABI39_RS15270
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ABI39_RS15275
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ABI39_RS15285
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ABI39_RS15290
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