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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS14875 and ABI39_RS14880 overlap by 4 nucleotides
ABI39_RS14880 and ABI39_RS14885 overlap by 8 nucleotides
ABI39_RS14885 and ABI39_RS14890 are separated by 229 nucleotides
ABI39_RS14890 and ABI39_RS14895 are separated by 439 nucleotides
ABI39_RS14875: ABI39_RS14875 - hypothetical protein, at 3,861,256 to 3,861,726
_RS14875
ABI39_RS14880: ABI39_RS14880 - GNAT family N-acetyltransferase, at 3,861,723 to 3,862,259
_RS14880
ABI39_RS14885: ABI39_RS14885 - YqgE/AlgH family protein, at 3,862,252 to 3,862,842
_RS14885
ABI39_RS14890: ABI39_RS14890 - tRNA-Asp, at 3,863,072 to 3,863,145
_RS14890
ABI39_RS14895: ABI39_RS14895 - response regulator, at 3,863,585 to 3,867,568
_RS14895
Group
Condition
ABI39
_RS14875
ABI39
_RS14880
ABI39
_RS14885
ABI39
_RS14890
ABI39
_RS14895
carbon source
Starch from potato (C)
+0.4
-0.2
-0.2
-2.6
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+1.0
-1.5
+0.1
-1.7
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
-0.9
-2.3
+0.9
-0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+1.3
-1.5
-0.7
-0.7
-0.5
carbon source
Galactan from Potato (C)
-0.4
-0.9
+1.2
-2.1
+0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-2.2
+0.7
+0.4
-0.5
-0.0
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-1.1
+0.5
+0.5
-1.5
-0.0
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.5
-0.9
+0.1
-1.2
-0.0
carbon source
B-glucan from yeast (C)
+0.7
-0.4
+0.1
-1.4
-0.3
carbon source
Mannose-6-Phosphate (C)
+0.4
-0.6
+0.5
-1.7
+0.0
carbon source
Mucin from porcine stomach type III (C)
+0.3
-0.7
+0.7
-1.4
-0.1
carbon source
Fructose-6-phosphate (C)
+0.4
-0.3
+0.4
-1.8
+0.1
carbon source
Amylopectin from Potato (C)
+1.0
-0.4
-0.8
-0.4
-0.4
carbon source
Galactan from Potato (C)
+0.3
-0.9
+1.8
-1.7
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-1.1
-0.4
+0.7
+0.7
-0.2
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
+0.9
-1.2
-0.1
+0.4
+0.0
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.6
+1.5
-0.6
-0.2
-0.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.7
+0.1
-1.8
+1.1
+0.2
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
+0.0
-1.1
+1.5
+0.1
carbon source
N-acetylneuraminic (C)
+0.8
-0.7
-0.4
+0.8
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+1.7
-1.4
+0.8
-0.2
-0.0
carbon source
amylopectin from maize (C)
+1.0
+1.1
+0.4
-0.9
-0.6
carbon source
Pectic galactan from potato (C)
+0.6
-0.4
+1.3
-0.4
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.8
-0.7
+0.2
+1.0
+0.0
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.9
-0.6
+0.3
+1.0
+0.2
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.9
-1.0
-0.3
+2.5
+0.1
carbon source
D-Fructose 2.5 mg/ml (C)
+0.1
+0.8
-0.0
+1.7
+0.2
carbon source
Pectin from apple; filtered 1 mg/ml (C)
+1.4
+0.7
+0.4
+0.1
+0.0
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+1.5
+0.3
+0.2
+0.8
-0.0
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+2.1
+0.9
+0.3
+0.1
-0.1
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