Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS23080 and ABI39_RS14855 are separated by 610 nucleotidesABI39_RS14855 and ABI39_RS14860 are separated by 104 nucleotidesABI39_RS14860 and ABI39_RS14865 overlap by 35 nucleotidesABI39_RS14865 and ABI39_RS14870 are separated by 78 nucleotides ABI39_RS23080: ABI39_RS23080 - hypothetical protein, at 3,855,322 to 3,855,471 _RS23080 ABI39_RS14855: ABI39_RS14855 - DEAD/DEAH box helicase, at 3,856,082 to 3,858,385 _RS14855 ABI39_RS14860: ABI39_RS14860 - YihA family ribosome biogenesis GTP-binding protein, at 3,858,490 to 3,859,092 _RS14860 ABI39_RS14865: ABI39_RS14865 - sodium:solute symporter, at 3,859,058 to 3,860,539 _RS14865 ABI39_RS14870: ABI39_RS14870 - recombination protein RecR, at 3,860,618 to 3,861,235 _RS14870
Group Condition ABI39_RS23080 ABI39_RS14855 ABI39_RS14860 ABI39_RS14865 ABI39_RS14870
carbon source (+)-Arabinogalactan (C) N.D. -0.2 N.D. -0.3 -0.6
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) N.D. -0.3 N.D. +0.0 -0.6
carbon source D-Xylose 2.5 mg/ml (C) N.D. +0.1 N.D. -0.7 -0.4
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) N.D. +0.1 N.D. -0.2 -0.8
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) N.D. +0.4 N.D. -0.2 -0.9
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) N.D. +0.4 N.D. -0.3 -0.5
carbon source D-Glucose 5 mg/ml (C) N.D. +0.4 N.D. -0.3 -0.3
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) N.D. +0.3 N.D. -0.6 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.3 N.D. -0.5 +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) N.D. +0.0 N.D. -0.6 +0.5
carbon source D-Raffinose (C) N.D. +0.3 N.D. -0.4 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.3 N.D. -0.6 +0.8
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) N.D. +0.4 N.D. -0.4 +0.5
carbon source Xylan from Beechwood (C) N.D. +0.5 N.D. -0.3 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) N.D. +0.5 N.D. -0.5 +0.4
carbon source D-Fructose 2.5 mg/ml (C) N.D. +0.2 N.D. -0.2 +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) N.D. +0.5 N.D. -0.2 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. +0.5 N.D. -0.2 +0.4
carbon source Galactan from Potato (C) N.D. +1.2 N.D. -0.5 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. +0.2 N.D. -0.3 +0.8
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) N.D. +0.5 N.D. -0.3 +0.5
carbon source beta-Cyclodextrin 2.5 mg/ml (C) N.D. +0.3 N.D. -0.1 +0.6
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) N.D. +0.5 N.D. -0.3 +0.6
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) N.D. +0.3 N.D. -0.4 +0.9
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) N.D. +0.5 N.D. -0.0 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) N.D. +0.2 N.D. +0.1 +0.6
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.7 N.D. -0.4 +0.7
carbon source Pectin from apple; filtered 1 mg/ml (C) N.D. +0.4 N.D. -0.0 +0.7
carbon source Pectin from apple; filtered 1 mg/ml (C) N.D. +0.6 N.D. -0.0 +0.9
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. +1.0 N.D. -0.2 +1.3
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