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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS13820 and ABI39_RS13825 are separated by 267 nucleotides
ABI39_RS13825 and ABI39_RS13830 are separated by 261 nucleotides
ABI39_RS13830 and ABI39_RS13835 are separated by 35 nucleotides
ABI39_RS13835 and ABI39_RS13840 overlap by 23 nucleotides
ABI39_RS13820: ABI39_RS13820 - DUF4625 domain-containing protein, at 3,592,446 to 3,592,940
_RS13820
ABI39_RS13825: ABI39_RS13825 - O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase, at 3,593,208 to 3,594,494
_RS13825
ABI39_RS13830: ABI39_RS13830 - L-lactate permease, at 3,594,756 to 3,596,255
_RS13830
ABI39_RS13835: ABI39_RS13835 - DUF3037 domain-containing protein, at 3,596,291 to 3,596,674
_RS13835
ABI39_RS13840: ABI39_RS13840 - hypothetical protein, at 3,596,652 to 3,597,434
_RS13840
Group
Condition
ABI39
_RS13820
ABI39
_RS13825
ABI39
_RS13830
ABI39
_RS13835
ABI39
_RS13840
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.3
-0.2
-0.1
-3.8
+0.2
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.1
-3.7
-0.3
carbon source
amylopectin from maize (C)
-0.0
-0.1
+0.1
-3.8
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.1
-0.0
+0.2
-2.3
+0.4
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.2
+0.2
-0.1
-3.1
-0.2
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
-0.3
-0.1
+0.2
-3.1
-0.1
carbon source
D-Arabinose (C)
+0.0
-0.0
+0.0
-3.0
-0.1
carbon source
N-acetylneuraminic (C)
-0.1
-0.0
+0.1
-3.3
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.1
-0.2
+0.2
-3.2
+0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.0
+0.0
+0.2
-1.5
+0.2
carbon source
amylopectin from maize (C)
-0.2
+0.0
-0.0
-3.0
+0.2
carbon source
N-acetylneuraminic (C)
+0.1
-0.2
-0.0
-3.1
+0.1
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.0
-0.1
+0.1
-2.7
-0.3
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.2
+0.0
+0.1
-3.0
+0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
-0.0
+0.6
-3.6
+0.2
carbon source
B-glucan from yeast (C)
-0.2
+0.1
-0.0
-2.3
-0.2
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
+0.1
+0.0
-0.0
-2.6
-0.1
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.1
-0.1
-0.1
-2.1
-0.4
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
-0.1
+0.0
+0.0
-2.5
+0.1
carbon source
Mucin from porcine stomach type III (C)
+0.3
-0.2
+0.1
-2.0
-0.4
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.3
+0.2
+0.4
-2.0
-1.0
carbon source
B-glucan from yeast (C)
+0.3
+0.1
-0.1
-2.1
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.1
+0.1
+0.2
-2.9
+0.5
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.2
+0.0
+0.0
-2.4
+0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
-0.1
+0.6
-2.1
-0.1
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.1
+0.4
+0.5
-1.3
-0.7
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.1
+0.5
+0.6
-1.2
-0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
+0.7
-0.7
-1.0
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.3
-0.1
+0.5
+1.1
-0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.5
-0.0
+0.6
+1.3
-0.2
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