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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS13525 and ABI39_RS13530 are separated by 85 nucleotides
ABI39_RS13530 and ABI39_RS13535 are separated by 147 nucleotides
ABI39_RS13535 and ABI39_RS13540 are separated by 17 nucleotides
ABI39_RS13540 and ABI39_RS13545 are separated by 12 nucleotides
ABI39_RS13525: ABI39_RS13525 - DUF4981 domain-containing protein, at 3,522,498 to 3,525,689
_RS13525
ABI39_RS13530: ABI39_RS13530 - beta-glycosidase, at 3,525,775 to 3,528,615
_RS13530
ABI39_RS13535: ABI39_RS13535 - discoidin domain-containing protein, at 3,528,763 to 3,531,993
_RS13535
ABI39_RS13540: ABI39_RS13540 - sialate O-acetylesterase, at 3,532,011 to 3,533,435
_RS13540
ABI39_RS13545: ABI39_RS13545 - hypothetical protein, at 3,533,448 to 3,535,679
_RS13545
Group
Condition
ABI39
_RS13525
ABI39
_RS13530
ABI39
_RS13535
ABI39
_RS13540
ABI39
_RS13545
carbon source
D-Glucose 2.5 mg/ml (C)
-0.1
-0.2
-0.3
-0.1
-0.1
carbon source
amylopectin from maize (C)
-0.2
+0.1
-0.3
-0.2
+0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
+0.2
-0.4
-0.1
+0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.0
+0.4
-0.2
-0.1
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
-0.0
+0.3
-0.2
-0.1
carbon source
amylopectin from maize (C)
-0.2
+0.3
+0.2
-0.1
-0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
+0.0
+0.2
-0.2
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
-0.1
+0.3
-0.2
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.0
+0.4
-0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
+0.2
+0.1
+0.1
-0.2
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
+0.2
-0.2
+0.1
+0.1
+0.1
carbon source
D-Glucose 5 mg/ml (C)
+0.2
-0.1
+0.2
+0.1
-0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
-0.2
+0.3
+0.0
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.1
-0.1
+0.2
+0.2
-0.1
carbon source
Amylopectin from Potato (C)
+0.0
+0.2
-0.2
+0.2
+0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.1
+0.4
-0.0
carbon source
B-glucan from yeast (C)
-0.1
+0.2
+0.0
+0.2
+0.2
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
+0.1
-0.1
+0.2
+0.2
+0.2
carbon source
Galactan from Potato (C)
-0.4
+0.2
+0.3
+0.4
+0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.3
+0.1
+0.3
-0.2
+0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.2
+0.2
+0.0
+0.3
-0.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.4
+0.2
+0.1
+0.1
+0.0
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.2
+0.1
+0.2
+0.4
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.0
+0.5
+0.1
+0.2
+0.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.5
-0.0
+0.0
+0.3
+0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.3
+0.1
+0.1
+0.1
+0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.3
-0.0
+0.0
+0.4
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.3
+0.0
+0.2
+0.3
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.1
+0.3
+0.4
+0.3
+0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.5
+0.2
+0.2
+0.2
+0.2
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