Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS13285 and ABI39_RS13290 are separated by 27 nucleotidesABI39_RS13290 and ABI39_RS13295 are separated by 4 nucleotidesABI39_RS13295 and ABI39_RS13300 overlap by 4 nucleotidesABI39_RS13300 and ABI39_RS13305 are separated by 14 nucleotides ABI39_RS13285: ABI39_RS13285 - carboxypeptidase regulatory-like domain-containing protein, at 3,460,613 to 3,461,839 _RS13285 ABI39_RS13290: ABI39_RS13290 - YjbH domain-containing protein, at 3,461,867 to 3,463,084 _RS13290 ABI39_RS13295: ABI39_RS13295 - YjbH domain-containing protein, at 3,463,089 to 3,463,817 _RS13295 ABI39_RS13300: ABI39_RS13300 - glycosyltransferase, at 3,463,814 to 3,464,632 _RS13300 ABI39_RS13305: ABI39_RS13305 - WcaF family extracellular polysaccharide biosynthesis acetyltransferase, at 3,464,647 to 3,465,201 _RS13305
Group Condition ABI39_RS13285 ABI39_RS13290 ABI39_RS13295 ABI39_RS13300 ABI39_RS13305
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.1 -0.6 -0.2 -0.4 -0.2
carbon source Amylopectin from Potato (C) -0.1 -0.6 -0.4 -0.0 -0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.3 -0.7 -0.3 -0.3 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.5 -0.9 +0.4 -0.1 -0.2
carbon source B-glucan from yeast (C) -0.4 -0.4 -0.1 -0.2 -0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.0 -0.9 -0.1 -0.2 -0.0
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.2 -0.8 -0.0 -0.3 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.3 -0.5 -0.1 +0.0 -0.2
carbon source Starch from potato (C) -0.3 -0.3 -0.2 -0.3 -0.1
carbon source Galactose 1-phosphate dipotassium salt (C) -0.3 -0.4 -0.1 -0.2 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.2 -0.5 +0.1 -0.3 -0.2
carbon source Amylopectin from Potato (C) +0.1 -0.5 -0.3 -0.1 -0.3
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.0 -0.5 -0.4 +0.0 -0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.0 -0.4 -0.3 -0.1 -0.3
carbon source amylopectin from maize (C) -0.7 -0.5 -0.1 +0.0 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.2 -0.8 +0.0 -0.3 +0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.1 -0.6 -0.1 -0.1 -0.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.2 -0.3 -0.2 -0.2 -0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.0 -0.6 -0.1 -0.1 -0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.3 -0.5 +0.1 -0.2 +0.0
carbon source Galactan from Potato (C) -0.2 -0.3 -0.3 +0.3 -0.4
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 -0.5 -0.3 -0.0 -0.2
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.1 -0.2 -0.3 +0.2 -0.3
carbon source Xylan from Beechwood (C) -0.2 -0.3 +0.2 -0.3 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 -0.2 +0.6 -0.5 -0.5
carbon source amylopectin from maize (C) -0.1 -0.6 +0.3 -0.2 +0.0
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.3 -0.1 +0.1 -0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 -0.2 -0.3 -0.1 +0.2
carbon source Fructose-6-phosphate (C) -0.4 -0.2 +0.4 +0.1 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.5 -0.2 -0.2 -0.0
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