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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS13285 and ABI39_RS13290 are separated by 27 nucleotides
ABI39_RS13290 and ABI39_RS13295 are separated by 4 nucleotides
ABI39_RS13295 and ABI39_RS13300 overlap by 4 nucleotides
ABI39_RS13300 and ABI39_RS13305 are separated by 14 nucleotides
ABI39_RS13285: ABI39_RS13285 - carboxypeptidase regulatory-like domain-containing protein, at 3,460,613 to 3,461,839
_RS13285
ABI39_RS13290: ABI39_RS13290 - YjbH domain-containing protein, at 3,461,867 to 3,463,084
_RS13290
ABI39_RS13295: ABI39_RS13295 - YjbH domain-containing protein, at 3,463,089 to 3,463,817
_RS13295
ABI39_RS13300: ABI39_RS13300 - glycosyltransferase, at 3,463,814 to 3,464,632
_RS13300
ABI39_RS13305: ABI39_RS13305 - WcaF family extracellular polysaccharide biosynthesis acetyltransferase, at 3,464,647 to 3,465,201
_RS13305
Group
Condition
ABI39
_RS13285
ABI39
_RS13290
ABI39
_RS13295
ABI39
_RS13300
ABI39
_RS13305
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.1
-0.6
-0.2
-0.4
-0.2
carbon source
Amylopectin from Potato (C)
-0.1
-0.6
-0.4
-0.0
-0.3
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.3
-0.7
-0.3
-0.3
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.5
-0.9
+0.4
-0.1
-0.2
carbon source
B-glucan from yeast (C)
-0.4
-0.4
-0.1
-0.2
-0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.0
-0.9
-0.1
-0.2
-0.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.2
-0.8
-0.0
-0.3
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.3
-0.5
-0.1
+0.0
-0.2
carbon source
Starch from potato (C)
-0.3
-0.3
-0.2
-0.3
-0.1
carbon source
Galactose 1-phosphate dipotassium salt (C)
-0.3
-0.4
-0.1
-0.2
-0.1
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.2
-0.5
+0.1
-0.3
-0.2
carbon source
Amylopectin from Potato (C)
+0.1
-0.5
-0.3
-0.1
-0.3
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.0
-0.5
-0.4
+0.0
-0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.0
-0.4
-0.3
-0.1
-0.3
carbon source
amylopectin from maize (C)
-0.7
-0.5
-0.1
+0.0
+0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.2
-0.8
+0.0
-0.3
+0.2
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
-0.1
-0.6
-0.1
-0.1
-0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.2
-0.3
-0.2
-0.2
-0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.0
-0.6
-0.1
-0.1
-0.1
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.3
-0.5
+0.1
-0.2
+0.0
carbon source
Galactan from Potato (C)
-0.2
-0.3
-0.3
+0.3
-0.4
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.2
-0.5
-0.3
-0.0
-0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.1
-0.2
-0.3
+0.2
-0.3
carbon source
Xylan from Beechwood (C)
-0.2
-0.3
+0.2
-0.3
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
-0.2
+0.6
-0.5
-0.5
carbon source
amylopectin from maize (C)
-0.1
-0.6
+0.3
-0.2
+0.0
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.2
-0.3
-0.1
+0.1
-0.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
-0.2
-0.3
-0.1
+0.2
carbon source
Fructose-6-phosphate (C)
-0.4
-0.2
+0.4
+0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.0
+0.5
-0.2
-0.2
-0.0
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