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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS12560 and ABI39_RS12565 are separated by 18 nucleotides
ABI39_RS12565 and ABI39_RS12570 are separated by 237 nucleotides
ABI39_RS12570 and ABI39_RS12575 are separated by 164 nucleotides
ABI39_RS12575 and ABI39_RS12580 are separated by 215 nucleotides
ABI39_RS12560: ABI39_RS12560 - GGGtGRT protein, at 3,298,310 to 3,299,320
_RS12560
ABI39_RS12565: ABI39_RS12565 - hypothetical protein, at 3,299,339 to 3,300,040
_RS12565
ABI39_RS12570: ABI39_RS12570 - DMP19 family protein, at 3,300,278 to 3,300,787
_RS12570
ABI39_RS12575: ABI39_RS12575 - sodium:glutamate symporter, at 3,300,952 to 3,302,331
_RS12575
ABI39_RS12580: ABI39_RS12580 - hypothetical protein, at 3,302,547 to 3,303,161
_RS12580
Group
Condition
ABI39
_RS12560
ABI39
_RS12565
ABI39
_RS12570
ABI39
_RS12575
ABI39
_RS12580
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-3.8
-3.7
-0.6
+0.1
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-3.0
-3.7
-0.3
-0.0
+0.0
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.5
-3.7
-0.8
+0.1
-0.1
carbon source
D-Mannose (C)
-3.3
-3.6
-0.0
-0.0
+0.1
carbon source
D-Mannose (C)
-3.2
-3.3
-0.2
+0.1
+0.2
carbon source
D-Glucose (C)
-3.1
-3.0
-0.2
+0.0
+0.0
carbon source
D-Fructose (C)
-2.9
-2.8
-0.2
-0.1
-0.1
carbon source
D-Glucose 5 mg/ml (C)
-2.8
-2.7
-0.2
-0.2
-0.1
carbon source
D-Glucose (C)
-2.9
-3.0
-0.3
+0.1
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.7
-2.6
-0.5
+0.1
-0.2
carbon source
D-Raffinose (C)
-2.6
-3.0
-0.0
+0.1
-0.1
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.3
-2.5
-0.4
-0.2
-0.1
carbon source
D-Mannose 2.5 mg/ml (C)
-2.7
-2.5
-0.2
-0.2
+0.1
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.6
-2.4
-0.2
-0.3
-0.0
carbon source
Xylan from corn core; autoclaved 2.5 mg/ml (C)
-2.5
-2.6
-0.4
-0.1
+0.1
carbon source
D-Galactose (C)
-2.9
-2.8
+0.2
-0.1
+0.1
carbon source
D-Fructose (C)
-2.6
-2.7
-0.1
-0.0
+0.1
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
-2.6
-2.4
-0.1
-0.1
-0.0
carbon source
Xylan from corn core; autoclaved 2.5 mg/ml (C)
-2.4
-2.3
-0.2
-0.3
-0.1
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.4
-2.2
-0.2
-0.1
-0.1
carbon source
D-Fructose 2.5 mg/ml (C)
-2.4
-2.5
-0.2
-0.0
+0.1
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
-2.4
-2.1
-0.3
-0.2
+0.1
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.4
-2.4
-0.0
-0.0
+0.0
carbon source
D-Raffinose (C)
-2.5
-2.4
-0.1
+0.2
-0.1
carbon source
D-Mannose 2.5 mg/ml (C)
-2.2
-2.2
-0.1
-0.1
+0.1
carbon source
D-Glucose 2.5 mg/ml (C)
-1.8
-2.5
-0.2
-0.1
+0.1
carbon source
D-Galactose (C)
-2.4
-2.3
+0.2
+0.2
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.4
-2.0
-0.0
-0.2
+0.4
carbon source
Inulin from chicory; autoclaved 2.5 mg/ml (C)
-1.9
-2.0
+0.4
+0.1
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.6
-1.7
+0.1
-0.3
+0.6
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