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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS12380 and ABI39_RS12385 are separated by 173 nucleotides
ABI39_RS12385 and ABI39_RS12390 are separated by 22 nucleotides
ABI39_RS12390 and ABI39_RS12395 are separated by 97 nucleotides
ABI39_RS12395 and ABI39_RS12400 are separated by 4 nucleotides
ABI39_RS12380: ABI39_RS12380 - acyltransferase, at 3,263,007 to 3,264,158
_RS12380
ABI39_RS12385: ABI39_RS12385 - transcriptional repressor, at 3,264,332 to 3,264,757
_RS12385
ABI39_RS12390: ABI39_RS12390 - heavy metal translocating P-type ATPase, at 3,264,780 to 3,266,489
_RS12390
ABI39_RS12395: ABI39_RS12395 - hypothetical protein, at 3,266,587 to 3,267,405
_RS12395
ABI39_RS12400: ABI39_RS12400 - SDR family oxidoreductase, at 3,267,410 to 3,268,168
_RS12400
Group
Condition
ABI39
_RS12380
ABI39
_RS12385
ABI39
_RS12390
ABI39
_RS12395
ABI39
_RS12400
carbon source
Fructose-6-phosphate (C)
-0.1
-1.9
-0.2
+0.1
-0.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
-1.2
-0.2
+0.1
-0.2
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.1
-1.5
-0.1
+0.1
+0.0
carbon source
amylopectin from maize (C)
+0.0
-1.0
+0.1
+0.0
-0.5
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.2
-0.4
-0.1
-0.2
-0.3
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.1
-0.8
-0.1
-0.2
+0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.1
-0.8
-0.2
+0.2
-0.2
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.4
+0.1
-0.1
-0.2
-0.5
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.0
-0.6
-0.1
+0.2
-0.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.0
-0.6
-0.2
-0.2
-0.1
carbon source
Fructose-6-phosphate (C)
+0.1
-0.8
-0.1
+0.1
-0.3
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.3
-0.7
-0.1
+0.1
-0.1
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.6
-0.1
+0.1
-0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.2
-0.6
-0.0
+0.1
-0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.3
-0.7
+0.1
+0.1
+0.0
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.2
-0.6
-0.0
-0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
-0.8
+0.3
-0.2
-0.1
carbon source
Pectic galactan from potato (C)
-0.0
-0.5
+0.0
+0.1
-0.4
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.3
-0.6
-0.1
+0.4
-0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.1
-0.4
+0.2
-0.4
-0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.1
-0.6
+0.1
+0.1
+0.2
carbon source
Amylopectin from Potato (C)
-0.1
+0.3
-0.1
+0.2
-0.5
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
-0.2
+0.4
-0.1
-0.1
-0.2
carbon source
Xylan from Beechwood (C)
-0.1
-0.5
-0.1
+0.2
+0.3
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.3
+0.4
-0.3
+0.0
-0.0
carbon source
amylopectin from maize (C)
+0.1
-0.0
-0.2
+0.5
-0.3
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.1
+0.5
-0.2
+0.2
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.4
+0.4
-0.1
+0.2
+0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.3
+0.7
-0.2
+0.1
+0.1
carbon source
Galactan from Potato (C)
-0.1
+2.3
-0.0
-0.0
+0.5
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