Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS12270 and ABI39_RS12275 are separated by 102 nucleotidesABI39_RS12275 and ABI39_RS12280 are separated by 270 nucleotidesABI39_RS12280 and ABI39_RS12285 are separated by 37 nucleotidesABI39_RS12285 and ABI39_RS12290 are separated by 1 nucleotides ABI39_RS12270: ABI39_RS12270 - DUF4974 domain-containing protein, at 3,239,579 to 3,240,748 _RS12270 ABI39_RS12275: ABI39_RS12275 - RNA polymerase sigma-70 factor, at 3,240,851 to 3,241,402 _RS12275 ABI39_RS12280: ABI39_RS12280 - hypothetical protein, at 3,241,673 to 3,242,188 _RS12280 ABI39_RS12285: ABI39_RS12285 - GNAT family N-acetyltransferase, at 3,242,226 to 3,242,810 _RS12285 ABI39_RS12290: ABI39_RS12290 - class I SAM-dependent methyltransferase, at 3,242,812 to 3,243,561 _RS12290
Group Condition ABI39_RS12270 ABI39_RS12275 ABI39_RS12280 ABI39_RS12285 ABI39_RS12290
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.1 -0.2 -0.3 +0.1 -0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.3 -0.3 -0.4 +0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 -0.3 -0.5 -0.2 +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.0 -0.6 -0.1 +0.3 -0.2
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.3 -0.2 -0.4 -0.3 +0.0
carbon source amylopectin from maize (C) -0.3 -0.2 -0.2 -0.1 +0.3
carbon source Galactan from Potato (C) +0.3 -0.3 -0.0 -0.2 -0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.1 -0.6 -0.2 +0.2 +0.1
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.1 -0.4 -0.3 +0.3 -0.0
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.1 -0.4 -0.3 +0.2 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.1 -0.2 -0.4 +0.3 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.3 +0.2 -0.3 +0.1
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.3 -0.5 -0.1 +0.3 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 -0.6 +0.1 +0.3 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.2 -0.3 +0.3 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.3 -0.2 +0.4 -0.4 -0.0
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.1 -0.0 -0.3 +0.4 +0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 +0.2 -0.1 -0.4 +0.3
carbon source Galactan from Potato (C) +0.1 -0.1 +0.3 -0.4 +0.4
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.3 -0.2 +0.3 +0.2 -0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.2 -0.3 +0.1 +0.0 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.5 -0.0 +0.1 -0.2 +0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 +0.5 -0.8 +0.7 -0.2
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.3 +0.1 +0.4 +0.1 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 -0.0 +0.3 -0.1 +0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 -0.2 +0.4 +0.4
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.4 +0.1 -0.2 +0.6 +0.0
carbon source D-Xylose 2.5 mg/ml (C) +0.3 +0.2 -0.1 +0.3 +0.3
carbon source NAG 2.5 mg/ml (C) +0.3 +0.0 +0.4 +0.2 +0.1
carbon source D-Fructose 2.5 mg/ml (C) +0.5 -0.0 +0.0 +0.3 +0.4
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