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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS12270 and ABI39_RS12275 are separated by 102 nucleotides
ABI39_RS12275 and ABI39_RS12280 are separated by 270 nucleotides
ABI39_RS12280 and ABI39_RS12285 are separated by 37 nucleotides
ABI39_RS12285 and ABI39_RS12290 are separated by 1 nucleotides
ABI39_RS12270: ABI39_RS12270 - DUF4974 domain-containing protein, at 3,239,579 to 3,240,748
_RS12270
ABI39_RS12275: ABI39_RS12275 - RNA polymerase sigma-70 factor, at 3,240,851 to 3,241,402
_RS12275
ABI39_RS12280: ABI39_RS12280 - hypothetical protein, at 3,241,673 to 3,242,188
_RS12280
ABI39_RS12285: ABI39_RS12285 - GNAT family N-acetyltransferase, at 3,242,226 to 3,242,810
_RS12285
ABI39_RS12290: ABI39_RS12290 - class I SAM-dependent methyltransferase, at 3,242,812 to 3,243,561
_RS12290
Group
Condition
ABI39
_RS12270
ABI39
_RS12275
ABI39
_RS12280
ABI39
_RS12285
ABI39
_RS12290
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.1
-0.2
-0.3
+0.1
-0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
-0.3
-0.3
-0.4
+0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.0
-0.3
-0.5
-0.2
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.0
-0.6
-0.1
+0.3
-0.2
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.3
-0.2
-0.4
-0.3
+0.0
carbon source
amylopectin from maize (C)
-0.3
-0.2
-0.2
-0.1
+0.3
carbon source
Galactan from Potato (C)
+0.3
-0.3
-0.0
-0.2
-0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.1
-0.6
-0.2
+0.2
+0.1
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
+0.1
-0.4
-0.3
+0.3
-0.0
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.1
-0.4
-0.3
+0.2
+0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.1
-0.2
-0.4
+0.3
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.1
-0.3
+0.2
-0.3
+0.1
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
+0.3
-0.5
-0.1
+0.3
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-0.6
+0.1
+0.3
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
-0.2
-0.3
+0.3
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.3
-0.2
+0.4
-0.4
-0.0
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.1
-0.0
-0.3
+0.4
+0.3
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.2
+0.2
-0.1
-0.4
+0.3
carbon source
Galactan from Potato (C)
+0.1
-0.1
+0.3
-0.4
+0.4
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.3
-0.2
+0.3
+0.2
-0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.2
-0.3
+0.1
+0.0
+0.4
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.5
-0.0
+0.1
-0.2
+0.2
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.3
+0.5
-0.8
+0.7
-0.2
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.3
+0.1
+0.4
+0.1
-0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.4
-0.0
+0.3
-0.1
+0.3
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.1
-0.2
+0.4
+0.4
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.4
+0.1
-0.2
+0.6
+0.0
carbon source
D-Xylose 2.5 mg/ml (C)
+0.3
+0.2
-0.1
+0.3
+0.3
carbon source
NAG 2.5 mg/ml (C)
+0.3
+0.0
+0.4
+0.2
+0.1
carbon source
D-Fructose 2.5 mg/ml (C)
+0.5
-0.0
+0.0
+0.3
+0.4
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