Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS12200 and ABI39_RS12205 are separated by 346 nucleotidesABI39_RS12205 and ABI39_RS12210 are separated by 142 nucleotidesABI39_RS12210 and ABI39_RS12215 are separated by 42 nucleotidesABI39_RS12215 and ABI39_RS12220 are separated by 323 nucleotides ABI39_RS12200: ABI39_RS12200 - AhpC/TSA family protein, at 3,220,466 to 3,221,647 _RS12200 ABI39_RS12205: ABI39_RS12205 - tRNA-Glu, at 3,221,994 to 3,222,068 _RS12205 ABI39_RS12210: ABI39_RS12210 - porin, at 3,222,211 to 3,223,500 _RS12210 ABI39_RS12215: ABI39_RS12215 - deoxyribonuclease IV, at 3,223,543 to 3,224,379 _RS12215 ABI39_RS12220: ABI39_RS12220 - TrpB-like pyridoxal phosphate-dependent enzyme, at 3,224,703 to 3,226,067 _RS12220
Group Condition ABI39_RS12200 ABI39_RS12205 ABI39_RS12210 ABI39_RS12215 ABI39_RS12220
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 N.D. -1.4 +0.2 -0.2
carbon source Glucose-6-Phosphate (C) +0.1 N.D. -0.5 -0.1 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 N.D. -0.8 +0.2 +0.1
carbon source Galactan from Potato (C) -0.4 N.D. -0.4 +0.4 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.3 N.D. -0.1 +0.4 -0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.3 N.D. -0.2 +0.4 -0.4
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.1 N.D. -0.7 +0.1 +0.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.2 N.D. -0.6 -0.2 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 N.D. -0.5 +0.5 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.7 N.D. -0.2 +0.8 -0.3
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.0 N.D. -0.1 +0.3 -0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 N.D. -0.3 +0.2 -0.3
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.3 N.D. -0.5 -0.1 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 N.D. +0.5 -0.0 -0.6
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.1 N.D. -0.5 +0.1 +0.3
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.0 N.D. -0.2 +0.6 -0.4
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.3 N.D. -0.5 +0.4 -0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.2 N.D. +0.3 +0.5 -0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 N.D. -0.4 +0.6 -0.1
carbon source Galactan from Potato (C) +0.2 N.D. +0.6 +0.4 -0.7
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.0 N.D. +0.7 +0.1 -0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.1 N.D. +0.6 +0.0 -0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.3 N.D. +0.5 -0.1 +0.1
carbon source Beta-Lactose 2.5 mg/ml (C) +0.4 N.D. +0.3 +0.1 +0.2
carbon source NAG 2.5 mg/ml (C) -0.0 N.D. +0.5 +0.1 +0.3
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.1 N.D. +0.7 +0.2 -0.0
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.1 N.D. +0.4 +0.3 +0.1
carbon source Beta-Lactose 2.5 mg/ml (C) +0.3 N.D. +0.4 +0.1 +0.4
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 N.D. +0.6 +0.4 +0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.4 N.D. +0.6 -0.1 +0.3
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