Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS11845 and ABI39_RS11850 are separated by 89 nucleotidesABI39_RS11850 and ABI39_RS11855 are separated by 165 nucleotidesABI39_RS11855 and ABI39_RS11860 are separated by 64 nucleotidesABI39_RS11860 and ABI39_RS11865 are separated by 104 nucleotides ABI39_RS11845: ABI39_RS11845 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 3,137,774 to 3,138,892 _RS11845 ABI39_RS11850: ABI39_RS11850 - NAD(+) synthase, at 3,138,982 to 3,140,907 _RS11850 ABI39_RS11855: ABI39_RS11855 - transcriptional repressor, at 3,141,073 to 3,141,495 _RS11855 ABI39_RS11860: ABI39_RS11860 - NADH peroxidase, at 3,141,560 to 3,142,111 _RS11860 ABI39_RS11865: ABI39_RS11865 - thioredoxin, at 3,142,216 to 3,142,674 _RS11865
Group Condition ABI39_RS11845 ABI39_RS11850 ABI39_RS11855 ABI39_RS11860 ABI39_RS11865
carbon source D-Xylose (C) -6.5 N.D. N.D. -0.4 -0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) -5.6 N.D. N.D. -0.9 -0.7
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -5.2 N.D. N.D. -1.5 -0.4
carbon source D-Xylose 2.5 mg/ml (C) -6.0 N.D. N.D. -0.6 -0.4
carbon source Pectin from apple; filtered 1 mg/ml (C) -4.2 N.D. N.D. -2.0 -0.8
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -5.2 N.D. N.D. -1.2 -0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -5.5 N.D. N.D. -0.5 -0.8
carbon source D-Arabinose (C) -6.4 N.D. N.D. -0.1 -0.2
carbon source D-Maltose (C) -6.8 N.D. N.D. +0.2 -0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -5.4 N.D. N.D. -0.7 -0.4
carbon source D-Glucose (C) -7.1 N.D. N.D. +0.3 +0.4
carbon source a-Cyclodextrin (C) -6.8 N.D. N.D. +0.2 +0.1
carbon source Amylopectin from Potato (C) -6.3 N.D. N.D. +0.5 -0.3
carbon source B-glucan from yeast (C) -6.0 N.D. N.D. -0.4 +0.3
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -5.3 N.D. N.D. +0.1 -1.0
carbon source Starch from potato (C) -6.3 N.D. N.D. +0.1 +0.1
carbon source Amylopectin from Potato (C) -6.6 N.D. N.D. +0.5 +0.3
carbon source beta-Cyclodextrin (C) -6.2 N.D. N.D. +0.2 +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -6.0 N.D. N.D. -0.2 +0.5
carbon source (+)-Arabinogalactan (C) -6.3 N.D. N.D. +0.5 +0.2
carbon source a-Cyclodextrin (C) -6.1 N.D. N.D. +0.3 +0.3
carbon source Starch from potato (C) -6.0 N.D. N.D. +0.5 +0.2
carbon source D-Fructose (C) -5.9 N.D. N.D. +0.6 +0.3
carbon source polygalacturonic (ultrapure) (C) -5.7 N.D. N.D. +0.5 +0.3
carbon source D-Mannose (C) -5.9 N.D. N.D. +0.8 +0.4
carbon source D-Galactose (C) -5.6 N.D. N.D. +0.4 +0.6
carbon source D-Galactose (C) -5.6 N.D. N.D. +0.5 +0.6
carbon source D-Mannose (C) -5.4 N.D. N.D. +0.7 +0.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -4.9 N.D. N.D. +0.4 +1.1
carbon source Galactan from Potato (C) -5.3 N.D. N.D. +1.7 +0.1
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