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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS11760 and ABI39_RS11765 are separated by 40 nucleotides
ABI39_RS11765 and ABI39_RS11770 are separated by 3 nucleotides
ABI39_RS11770 and ABI39_RS11775 are separated by 22 nucleotides
ABI39_RS11775 and ABI39_RS11780 are separated by 12 nucleotides
ABI39_RS11760: ABI39_RS11760 - FtsX-like permease family protein, at 3,119,096 to 3,120,346
_RS11760
ABI39_RS11765: ABI39_RS11765 - ABC transporter permease, at 3,120,387 to 3,121,667
_RS11765
ABI39_RS11770: ABI39_RS11770 - FtsX-like permease family protein, at 3,121,671 to 3,122,942
_RS11770
ABI39_RS11775: ABI39_RS11775 - ABC transporter permease, at 3,122,965 to 3,124,221
_RS11775
ABI39_RS11780: ABI39_RS11780 - FtsX-like permease family protein, at 3,124,234 to 3,125,478
_RS11780
Group
Condition
ABI39
_RS11760
ABI39
_RS11765
ABI39
_RS11770
ABI39
_RS11775
ABI39
_RS11780
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.5
-0.1
+0.1
-0.3
+0.1
carbon source
NAG 2.5 mg/ml (C)
-0.2
-0.3
+0.2
-0.3
-0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.2
-0.5
-0.2
+0.1
+0.1
carbon source
amylopectin from maize (C)
-0.3
-0.2
+0.1
+0.3
-0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.1
-0.2
+0.4
-0.2
-0.0
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.2
-0.5
+0.2
+0.2
-0.2
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
-0.1
-0.3
+0.1
+0.4
-0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.3
-0.3
+0.4
-0.2
-0.1
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.1
-0.3
-0.2
+0.5
-0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
-0.3
-0.0
+0.3
+0.2
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.2
-0.2
+0.0
+0.3
-0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.2
-0.2
+0.1
+0.2
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.3
-0.4
+0.1
+0.2
+0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-0.6
-0.1
+0.9
-0.1
carbon source
amylopectin from maize (C)
-0.3
-0.0
-0.2
+0.2
+0.7
carbon source
a-Cyclodextrin (C)
-0.3
+0.3
+0.2
+0.1
+0.1
carbon source
Amylopectin from Potato (C)
-0.2
-0.3
+0.5
+0.2
+0.2
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.2
+0.5
-0.1
+0.3
-0.1
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.4
-0.5
+0.5
-0.0
+0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
-0.2
+0.4
-0.2
+0.1
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.2
-0.5
+0.5
+0.4
-0.1
carbon source
D-Glucose 5 mg/ml (C)
+0.1
-0.2
+0.3
+0.2
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.3
-0.0
+0.6
+0.2
+0.0
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.3
-0.1
+0.3
+0.4
+0.0
carbon source
Galactan from Potato (C)
-0.2
+0.7
+0.1
-0.1
+0.4
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.0
+0.3
+0.2
+0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.0
+0.0
+0.3
+0.2
+0.4
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.1
-0.1
+0.3
+0.3
+0.3
carbon source
Red Arabinan from sugar-beet (C)
+0.1
+0.3
+0.2
+0.2
+0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.1
+0.2
+0.5
+0.5
-0.1
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