Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS11690 and ABI39_RS11695 are separated by 218 nucleotidesABI39_RS11695 and ABI39_RS11700 are separated by 69 nucleotidesABI39_RS11700 and ABI39_RS11705 are separated by 33 nucleotidesABI39_RS11705 and ABI39_RS11710 are separated by 307 nucleotides ABI39_RS11690: ABI39_RS11690 - cytidine deaminase, at 3,106,408 to 3,106,887 _RS11690 ABI39_RS11695: ABI39_RS11695 - heavy metal-binding domain-containing protein, at 3,107,106 to 3,107,429 _RS11695 ABI39_RS11700: ABI39_RS11700 - DUF4476 domain-containing protein, at 3,107,499 to 3,108,110 _RS11700 ABI39_RS11705: ABI39_RS11705 - DUF4476 domain-containing protein, at 3,108,144 to 3,108,815 _RS11705 ABI39_RS11710: ABI39_RS11710 - RNA polymerase sigma factor, at 3,109,123 to 3,109,659 _RS11710
Group Condition ABI39_RS11690 ABI39_RS11695 ABI39_RS11700 ABI39_RS11705 ABI39_RS11710
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.0 -0.4 -1.3
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.4 -0.3 +0.2 +0.1 -1.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 -0.6 -0.6 -0.0 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.6 -0.0 -0.4 -0.1 -1.7
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.6 -0.3 -0.1 -0.1 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.4 -0.3 -0.7
carbon source Mucin from porcine stomach,Type II (C) -0.6 -0.1 -0.0 -0.2 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.3 +0.1 -0.5 -0.4 -0.9
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.5 +0.3 -0.1 -0.4 -0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 -1.2 +0.5 +0.2 -0.5
carbon source D-Glucose 5 mg/ml (C) -0.3 +0.1 -0.1 +0.2 -1.0
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.5 -0.1 +0.1 +0.2 -0.6
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.9 -0.2 +0.3 +0.2 -0.3
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) -0.9 +0.2 +0.2 -0.0 -0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.4 +0.6 +0.3 -2.0
carbon source Mucin from porcine stomach type III (C) -1.2 +0.5 +0.2 -0.2 -0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.3 +0.4 -0.3 -0.3 -1.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.1 +0.2 -1.2
carbon source amylopectin from maize (C) -0.2 +0.5 -0.0 -0.4 -0.4
carbon source Galactan from Potato (C) +0.1 +0.6 -0.3 -0.6 -0.5
carbon source Mucin from porcine stomach type III (C) -0.9 +0.5 +0.2 +0.1 -0.3
carbon source a-Cyclodextrin (C) -0.5 +0.3 +0.4 -0.0 -0.4
carbon source amylopectin from maize (C) -0.1 +1.4 +0.2 -0.4 -1.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.4 +0.5 -0.2 -0.3 -0.4
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +1.1 -0.1 +0.1 -0.2 -0.6
carbon source Glycogen; filtered 2.5 mg/ml (C) +1.7 -0.3 -0.1 +0.0 -0.8
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +1.0 +0.2 +0.2 -0.1 -0.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.5 +0.3 +0.3 -0.0 +0.6
carbon source Glycogen; filtered 2.5 mg/ml (C) +1.5 +0.2 -0.2 -0.2 -0.5
carbon source Galactan from Potato (C) +0.1 +0.3 -0.4 -0.1 +1.7
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