Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS11365 and ABI39_RS11370 overlap by 4 nucleotidesABI39_RS11370 and ABI39_RS11375 are separated by 152 nucleotidesABI39_RS11375 and ABI39_RS11380 are separated by 41 nucleotidesABI39_RS11380 and ABI39_RS11385 are separated by 122 nucleotides ABI39_RS11365: ABI39_RS11365 - dihydroorotase, at 3,022,958 to 3,024,298 _RS11365 ABI39_RS11370: ABI39_RS11370 - polyprenol monophosphomannose synthase, at 3,024,295 to 3,025,044 _RS11370 ABI39_RS11375: ABI39_RS11375 - outer membrane beta-barrel protein, at 3,025,197 to 3,025,823 _RS11375 ABI39_RS11380: ABI39_RS11380 - DUF4136 domain-containing protein, at 3,025,865 to 3,026,503 _RS11380 ABI39_RS11385: ABI39_RS11385 - copper resistance protein NlpE N-terminal domain-containing protein, at 3,026,626 to 3,027,114 _RS11385
Group Condition ABI39_RS11365 ABI39_RS11370 ABI39_RS11375 ABI39_RS11380 ABI39_RS11385
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) N.D. N.D. -0.1 +0.2 -2.4
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) N.D. N.D. +0.1 -0.8 -0.7
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) N.D. N.D. +0.5 -0.0 -1.0
carbon source Galactose 1-phosphate dipotassium salt (C) N.D. N.D. +0.3 +0.3 -1.1
carbon source amylopectin from maize (C) N.D. N.D. +0.9 +0.5 -1.7
carbon source D-Mannose 2.5 mg/ml (C) N.D. N.D. +0.5 +0.3 -0.8
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. N.D. -0.2 +0.7 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.6 +0.2 -0.7
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.5 +0.4 -0.8
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.7 +0.1 -0.7
carbon source B-glucan from yeast (C) N.D. N.D. +0.9 -0.0 -0.6
carbon source Galactan from Potato (C) N.D. N.D. +0.4 +0.6 -0.5
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) N.D. N.D. -0.5 +0.3 +0.8
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.6 +0.6 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. N.D. +1.0 +0.5 -0.5
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) N.D. N.D. -0.2 +0.4 +1.0
carbon source Fructose-6-phosphate (C) N.D. N.D. +0.9 +0.2 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) N.D. N.D. +0.9 +0.1 +0.4
carbon source beta-Cyclodextrin 2.5 mg/ml (C) N.D. N.D. +0.8 +0.2 +0.4
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) N.D. N.D. +1.0 +0.3 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) N.D. N.D. +0.9 +0.5 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) N.D. N.D. +0.6 +0.6 +0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.4 +0.5 +0.8
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) N.D. N.D. +0.6 +0.3 +0.8
carbon source Glycogen; autoclaved 2.5 mg/ml (C) N.D. N.D. +0.6 +0.5 +0.7
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) N.D. N.D. +0.5 +0.8 +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) N.D. N.D. +1.0 +0.6 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. N.D. +0.4 +0.7 +0.9
carbon source Glycogen; filtered 2.5 mg/ml (C) N.D. N.D. +1.2 +1.0 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. N.D. +1.0 -0.1 +2.1
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ABI39_RS11365
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ABI39_RS11370
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