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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS11260 and ABI39_RS11265 are separated by 11 nucleotides
ABI39_RS11265 and ABI39_RS11270 are separated by 8 nucleotides
ABI39_RS11270 and ABI39_RS11275 overlap by 6 nucleotides
ABI39_RS11275 and ABI39_RS11280 are separated by 117 nucleotides
ABI39_RS11260: ABI39_RS11260 - DUF4348 domain-containing protein, at 3,001,768 to 3,002,628
_RS11260
ABI39_RS11265: ABI39_RS11265 - UDP-N-acetylmuramate dehydrogenase, at 3,002,640 to 3,003,653
_RS11265
ABI39_RS11270: ABI39_RS11270 - MBL fold metallo-hydrolase, at 3,003,662 to 3,004,438
_RS11270
ABI39_RS11275: ABI39_RS11275 - endonuclease III, at 3,004,433 to 3,005,077
_RS11275
ABI39_RS11280: ABI39_RS11280 - hypothetical protein, at 3,005,195 to 3,006,115
_RS11280
Group
Condition
ABI39
_RS11260
ABI39
_RS11265
ABI39
_RS11270
ABI39
_RS11275
ABI39
_RS11280
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.6
N.D.
-0.2
-0.3
-0.5
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-1.0
N.D.
-0.4
+0.1
-0.1
carbon source
Red Arabinan from sugar-beet (C)
-1.3
N.D.
+0.3
-0.1
+0.0
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.8
N.D.
+0.5
-0.0
+0.2
carbon source
Starch from potato (C)
-1.1
N.D.
+0.4
+0.3
+0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-1.1
N.D.
+0.8
+0.5
+0.2
carbon source
Amylopectin from Potato (C)
-0.5
N.D.
+0.3
+0.5
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+1.3
N.D.
-0.3
-0.5
+0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+1.8
N.D.
-0.4
-0.1
-0.5
carbon source
Galactan from Potato (C)
+0.7
N.D.
+0.5
-0.3
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-1.0
N.D.
+0.9
+0.8
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+1.0
N.D.
+0.4
-0.4
+0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.6
N.D.
+0.6
+0.2
-0.1
carbon source
(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
+1.2
N.D.
+0.2
+0.0
-0.1
carbon source
D-Glucose 2.5 mg/ml (C)
+0.8
N.D.
+0.2
+0.4
-0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+1.1
N.D.
+0.3
+0.1
-0.2
carbon source
Galactan from Potato (C)
+1.3
N.D.
+0.4
-0.5
+0.2
carbon source
D-Mannose 2.5 mg/ml (C)
+0.9
N.D.
+0.3
+0.1
+0.1
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+1.7
N.D.
-0.1
+0.1
-0.2
carbon source
Pectic galactan from potato (C)
+1.1
N.D.
+0.3
-0.1
+0.2
carbon source
Pectin from apple; filtered 1 mg/ml (C)
+1.1
N.D.
+0.2
+0.0
+0.1
carbon source
Xylan from Beechwood (C)
+0.8
N.D.
+0.5
+0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+1.3
N.D.
-0.0
-0.0
+0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+1.0
N.D.
+0.2
-0.0
+0.2
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.4
N.D.
+0.6
+0.2
+0.2
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+1.2
N.D.
+0.3
+0.2
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+1.2
N.D.
+0.3
+0.1
+0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
+1.2
N.D.
+0.4
+0.3
+0.0
carbon source
Xylan from Beechwood (C)
+1.4
N.D.
+0.3
+0.2
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+2.0
N.D.
+0.7
-0.0
-0.0
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