Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS11260 and ABI39_RS11265 are separated by 11 nucleotidesABI39_RS11265 and ABI39_RS11270 are separated by 8 nucleotidesABI39_RS11270 and ABI39_RS11275 overlap by 6 nucleotidesABI39_RS11275 and ABI39_RS11280 are separated by 117 nucleotides ABI39_RS11260: ABI39_RS11260 - DUF4348 domain-containing protein, at 3,001,768 to 3,002,628 _RS11260 ABI39_RS11265: ABI39_RS11265 - UDP-N-acetylmuramate dehydrogenase, at 3,002,640 to 3,003,653 _RS11265 ABI39_RS11270: ABI39_RS11270 - MBL fold metallo-hydrolase, at 3,003,662 to 3,004,438 _RS11270 ABI39_RS11275: ABI39_RS11275 - endonuclease III, at 3,004,433 to 3,005,077 _RS11275 ABI39_RS11280: ABI39_RS11280 - hypothetical protein, at 3,005,195 to 3,006,115 _RS11280
Group Condition ABI39_RS11260 ABI39_RS11265 ABI39_RS11270 ABI39_RS11275 ABI39_RS11280
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.6 N.D. -0.2 -0.3 -0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -1.0 N.D. -0.4 +0.1 -0.1
carbon source Red Arabinan from sugar-beet (C) -1.3 N.D. +0.3 -0.1 +0.0
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.8 N.D. +0.5 -0.0 +0.2
carbon source Starch from potato (C) -1.1 N.D. +0.4 +0.3 +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.1 N.D. +0.8 +0.5 +0.2
carbon source Amylopectin from Potato (C) -0.5 N.D. +0.3 +0.5 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.3 N.D. -0.3 -0.5 +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +1.8 N.D. -0.4 -0.1 -0.5
carbon source Galactan from Potato (C) +0.7 N.D. +0.5 -0.3 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 N.D. +0.9 +0.8 +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +1.0 N.D. +0.4 -0.4 +0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.6 N.D. +0.6 +0.2 -0.1
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +1.2 N.D. +0.2 +0.0 -0.1
carbon source D-Glucose 2.5 mg/ml (C) +0.8 N.D. +0.2 +0.4 -0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) +1.1 N.D. +0.3 +0.1 -0.2
carbon source Galactan from Potato (C) +1.3 N.D. +0.4 -0.5 +0.2
carbon source D-Mannose 2.5 mg/ml (C) +0.9 N.D. +0.3 +0.1 +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +1.7 N.D. -0.1 +0.1 -0.2
carbon source Pectic galactan from potato (C) +1.1 N.D. +0.3 -0.1 +0.2
carbon source Pectin from apple; filtered 1 mg/ml (C) +1.1 N.D. +0.2 +0.0 +0.1
carbon source Xylan from Beechwood (C) +0.8 N.D. +0.5 +0.1 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.3 N.D. -0.0 -0.0 +0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +1.0 N.D. +0.2 -0.0 +0.2
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.4 N.D. +0.6 +0.2 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +1.2 N.D. +0.3 +0.2 -0.2
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +1.2 N.D. +0.3 +0.1 +0.1
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +1.2 N.D. +0.4 +0.3 +0.0
carbon source Xylan from Beechwood (C) +1.4 N.D. +0.3 +0.2 -0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +2.0 N.D. +0.7 -0.0 -0.0
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