Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS10695 and ABI39_RS10700 are separated by 129 nucleotidesABI39_RS10700 and ABI39_RS10705 are separated by 61 nucleotidesABI39_RS10705 and ABI39_RS10710 are separated by 20 nucleotidesABI39_RS10710 and ABI39_RS10715 overlap by 4 nucleotides ABI39_RS10695: ABI39_RS10695 - RagB/SusD family nutrient uptake outer membrane protein, at 2,854,937 to 2,856,586 _RS10695 ABI39_RS10700: ABI39_RS10700 - DUF4982 domain-containing protein, at 2,856,716 to 2,859,052 _RS10700 ABI39_RS10705: ABI39_RS10705 - response regulator, at 2,859,114 to 2,863,388 _RS10705 ABI39_RS10710: ABI39_RS10710 - hypothetical protein, at 2,863,409 to 2,864,278 _RS10710 ABI39_RS10715: ABI39_RS10715 - hypothetical protein, at 2,864,275 to 2,864,577 _RS10715
Group Condition ABI39_RS10695 ABI39_RS10700 ABI39_RS10705 ABI39_RS10710 ABI39_RS10715
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.1 -0.2 +0.2 +0.1 -0.9
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.1 -0.2 -0.1 -0.5 +0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 -0.0 -0.2 -0.5 +0.4
carbon source Amylopectin from Potato (C) +0.1 -0.2 +0.1 +0.2 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.0 -0.4 +0.4
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.3 +0.2 -0.0 +0.4
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.1 -0.2 +0.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.3 -0.1 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.6 -0.3 +0.1 -0.5 +0.5
carbon source D-Mannose (C) +0.3 +0.1 +0.0 -0.3 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 +0.1 +0.3 -0.1 +0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.1 -0.2 +0.8
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.0 -0.1 +0.1 +0.4 +0.3
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.1 -0.1 +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.5 -0.2 +0.0 -0.1 +0.5
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.1 -0.1 +0.1 -0.0 +0.7
carbon source amylopectin from maize (C) +0.1 -0.0 +0.1 -0.1 +0.8
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.4 -0.3 -0.0 -0.4 +1.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 -0.2 +0.1 -0.1 +0.7
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.3 -0.2 +0.2 -0.2 +0.8
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.3 -0.2 +0.2 -0.1 +0.7
carbon source Galactan from Potato (C) +0.7 -0.0 -0.1 -0.1 +0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.1 +0.2 +0.0 +0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.0 -0.1 +0.3 +0.3 +0.8
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) +0.3 +0.0 +0.2 +0.1 +0.6
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) +0.3 +0.1 +0.2 +0.2 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.4 -0.2 +0.0 -0.4 +1.4
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.0 +0.2 +0.2 +0.7
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.0 +0.2 +0.3 +0.6
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.2 +0.3 +0.2 +0.6
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ABI39_RS10695
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ABI39_RS10700
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ABI39_RS10710
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ABI39_RS10715
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