Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS22025 and ABI39_RS10595 are separated by 134 nucleotidesABI39_RS10595 and ABI39_RS10600 overlap by 14 nucleotidesABI39_RS10600 and ABI39_RS10605 are separated by 58 nucleotidesABI39_RS10605 and ABI39_RS10610 are separated by 67 nucleotides ABI39_RS22025: ABI39_RS22025 - YbaN family protein, at 2,827,109 to 2,827,471 _RS22025 ABI39_RS10595: ABI39_RS10595 - 6-carboxytetrahydropterin synthase QueD, at 2,827,606 to 2,827,938 _RS10595 ABI39_RS10600: ABI39_RS10600 - radical SAM protein, at 2,827,925 to 2,828,470 _RS10600 ABI39_RS10605: ABI39_RS10605 - tRNA-Trp, at 2,828,529 to 2,828,601 _RS10605 ABI39_RS10610: ABI39_RS10610 - uracil-DNA glycosylase family protein, at 2,828,669 to 2,829,262 _RS10610
Group Condition ABI39_RS22025 ABI39_RS10595 ABI39_RS10600 ABI39_RS10605 ABI39_RS10610
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.8 -0.8 N.D. +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 -1.1 -0.1 N.D. -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.6 -0.1 N.D. -0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.4 -0.3 -0.3 N.D. -0.4
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.2 +0.2 -0.2 N.D. -0.7
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.5 -0.8 +0.1 N.D. +0.0
carbon source Beta-Lactose 2.5 mg/ml (C) +0.7 -0.7 -0.1 N.D. +0.1
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.7 -0.2 -0.3 N.D. -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.8 -0.5 +0.2 N.D. -0.4
carbon source N-acetylneuraminic (C) +0.5 -0.5 +0.3 N.D. +0.0
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.8 -0.3 -0.0 N.D. -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.6 +0.6 +0.2 N.D. +0.1
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +1.3 -0.1 -0.5 N.D. -0.4
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.8 -0.4 +0.1 N.D. -0.0
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.7 -0.2 +0.4 N.D. -0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +1.0 -0.1 -0.1 N.D. -0.3
carbon source Amylopectin from Potato (C) +0.7 -0.4 -0.1 N.D. +0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.8 +0.2 -0.2 N.D. -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 -0.6 +0.2 N.D. +0.3
carbon source amylopectin from maize (C) +1.2 -0.7 +0.0 N.D. +0.3
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.7 -0.2 +0.1 N.D. +0.3
carbon source D-Glucose 2.5 mg/ml (C) +0.6 -0.1 +0.3 N.D. +0.4
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.8 -0.3 +0.2 N.D. +0.6
carbon source D-Glucose 2.5 mg/ml (C) +0.7 -0.1 +0.2 N.D. +0.6
carbon source D-Fructose 2.5 mg/ml (C) +0.7 +0.0 +0.3 N.D. +0.4
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +1.5 -0.0 -0.1 N.D. +0.1
carbon source Galactan from Potato (C) +1.6 -0.0 +0.1 N.D. -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +1.9 -0.1 +0.0 N.D. -0.1
carbon source D-Galactose 2.5 mg/ml (C) +0.6 +0.3 +0.3 N.D. +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +1.9 -0.1 +0.4 N.D. -0.1
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