Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS10360 and ABI39_RS10365 overlap by 4 nucleotidesABI39_RS10365 and ABI39_RS10370 overlap by 14 nucleotidesABI39_RS10370 and ABI39_RS10375 are separated by 235 nucleotidesABI39_RS10375 and ABI39_RS10380 are separated by 169 nucleotides ABI39_RS10360: ABI39_RS10360 - homoserine O-succinyltransferase, at 2,770,582 to 2,771,499 _RS10360 ABI39_RS10365: ABI39_RS10365 - U32 family peptidase, at 2,771,496 to 2,773,325 _RS10365 ABI39_RS10370: ABI39_RS10370 - hypothetical protein, at 2,773,312 to 2,774,274 _RS10370 ABI39_RS10375: ABI39_RS10375 - TonB-dependent receptor, at 2,774,510 to 2,776,933 _RS10375 ABI39_RS10380: ABI39_RS10380 - helix-turn-helix transcriptional regulator, at 2,777,103 to 2,777,723 _RS10380
Group Condition ABI39_RS10360 ABI39_RS10365 ABI39_RS10370 ABI39_RS10375 ABI39_RS10380
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.6 -0.5 -1.0 N.D. -3.7
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.5 -0.2 -1.0 N.D. -0.9
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.7 -0.1 -0.5 N.D. -1.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.9 -0.2 -0.2 N.D. -1.0
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.6 -0.3 -0.6 N.D. -0.9
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.2 -0.3 -1.4 N.D. -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.5 -0.3 -0.5 N.D. -0.8
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.4 -0.0 -0.9 N.D. -0.8
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.2 -0.1 -0.7 N.D. -1.0
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.5 -0.1 -0.8 N.D. -0.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 -0.9 N.D. -0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 -0.2 -0.8 N.D. -0.9
carbon source Galactan from Potato (C) -0.1 -0.3 -1.0 N.D. +0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 -0.1 -0.1 N.D. -1.1
carbon source D-Mannose 2.5 mg/ml (C) +0.6 +0.3 +0.4 N.D. -0.7
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.5 +0.5 +0.5 N.D. -0.8
carbon source beta-Cyclodextrin (C) +0.8 +0.3 +0.4 N.D. -0.8
carbon source NAG (C) +0.6 +0.3 +0.5 N.D. -0.7
carbon source D-Glucose (C) +0.7 +0.3 +0.5 N.D. -0.6
carbon source D-Glucose (C) +0.8 +0.5 +0.6 N.D. -0.8
carbon source D-Raffinose (C) +0.6 +0.4 +0.5 N.D. -0.4
carbon source D-Mannose (C) +0.9 +0.4 +0.4 N.D. -0.4
carbon source D-Mannose (C) +0.9 +0.4 +0.5 N.D. -0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.8 +0.6 +1.0 N.D. -0.8
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 +0.7 +0.6 N.D. -0.2
carbon source D-Fructose (C) +1.0 +0.4 +0.6 N.D. -0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +1.0 +0.8 +0.5 N.D. -0.5
carbon source D-Galactose (C) +1.0 +0.8 +0.7 N.D. -0.2
carbon source D-Galactose (C) +1.1 +0.6 +0.6 N.D. -0.0
carbon source D-Fructose (C) +1.0 +0.5 +0.9 N.D. -0.2
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ABI39_RS10360
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ABI39_RS10365
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ABI39_RS10375
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ABI39_RS10380
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