Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS10345 and ABI39_RS10350 are separated by 9 nucleotidesABI39_RS10350 and ABI39_RS10355 are separated by 463 nucleotidesABI39_RS10355 and ABI39_RS10360 are separated by 381 nucleotidesABI39_RS10360 and ABI39_RS10365 overlap by 4 nucleotides ABI39_RS10345: ABI39_RS10345 - CusA/CzcA family heavy metal efflux RND transporter, at 2,763,909 to 2,766,992 _RS10345 ABI39_RS10350: ABI39_RS10350 - TolC family protein, at 2,767,002 to 2,768,171 _RS10350 ABI39_RS10355: ABI39_RS10355 - Gfo/Idh/MocA family oxidoreductase, at 2,768,635 to 2,770,200 _RS10355 ABI39_RS10360: ABI39_RS10360 - homoserine O-succinyltransferase, at 2,770,582 to 2,771,499 _RS10360 ABI39_RS10365: ABI39_RS10365 - U32 family peptidase, at 2,771,496 to 2,773,325 _RS10365
Group Condition ABI39_RS10345 ABI39_RS10350 ABI39_RS10355 ABI39_RS10360 ABI39_RS10365
carbon source Galactose 1-phosphate dipotassium salt (C) -2.5 -2.8 +0.1 -0.2 -0.1
carbon source Galactose 1-phosphate dipotassium salt (C) -2.4 -2.3 +0.1 -0.1 +0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 -0.6 -0.1 -0.9 -0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.4 -0.1 -0.5 -0.3
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.0 -0.7 -0.0 -0.5 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 -0.7 +0.0 -0.4 -0.3
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.2 -0.4 +0.2 -0.6 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.0 -0.7 +0.0 +0.3 -0.3
carbon source B-glucan from yeast (C) -0.1 -0.5 +0.1 +0.5 +0.1
carbon source B-glucan from yeast (C) -0.2 -0.6 +0.3 +0.6 +0.2
carbon source Fructose-6-phosphate (C) -0.1 -0.3 +0.0 +0.7 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.0 +0.0 +0.4 +0.6 -0.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.2 -0.1 +0.5 +0.4
carbon source beta-Cyclodextrin (C) -0.0 -0.2 -0.0 +0.8 +0.3
carbon source D-Raffinose (C) -0.2 -0.2 +0.2 +0.8 +0.3
carbon source D-Raffinose (C) -0.1 +0.0 +0.2 +0.6 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.1 +0.3 -0.0 +0.5 +0.5
carbon source D-Fructose (C) -0.1 -0.1 +0.1 +1.0 +0.4
carbon source D-Glucose (C) +0.2 +0.1 +0.0 +0.7 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.1 -0.1 +0.2 +0.8 +0.6
carbon source D-Mannose (C) +0.1 +0.0 +0.0 +0.9 +0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 +0.0 -0.1 +0.6 +0.7
carbon source D-Fructose (C) -0.0 -0.2 +0.2 +1.0 +0.5
carbon source D-Mannose (C) +0.1 +0.1 +0.0 +0.9 +0.4
carbon source D-Glucose (C) +0.1 +0.1 +0.0 +0.8 +0.5
carbon source N-acetylneuraminic (C) +0.5 +0.6 +0.1 +0.3 -0.0
carbon source D-Galactose (C) +0.0 +0.0 -0.0 +1.0 +0.8
carbon source D-Galactose (C) +0.0 -0.1 +0.2 +1.1 +0.6
carbon source N-acetylneuraminic (C) +0.6 +0.8 +0.0 +0.3 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.0 -0.0 +1.0 +0.8
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ABI39_RS10345
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ABI39_RS10350
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ABI39_RS10365
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