Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS10315 and ABI39_RS10320 are separated by 17 nucleotidesABI39_RS10320 and ABI39_RS10325 are separated by 396 nucleotidesABI39_RS10325 and ABI39_RS10330 are separated by 23 nucleotidesABI39_RS10330 and ABI39_RS10335 are separated by 28 nucleotides ABI39_RS10315: ABI39_RS10315 - RagB/SusD family nutrient uptake outer membrane protein, at 2,754,257 to 2,755,945 _RS10315 ABI39_RS10320: ABI39_RS10320 - hypothetical protein, at 2,755,963 to 2,757,636 _RS10320 ABI39_RS10325: ABI39_RS10325 - ABC-F family ATP-binding cassette domain-containing protein, at 2,758,033 to 2,759,976 _RS10325 ABI39_RS10330: ABI39_RS10330 - M13 family metallopeptidase, at 2,760,000 to 2,762,036 _RS10330 ABI39_RS10335: ABI39_RS10335 - hypothetical protein, at 2,762,065 to 2,762,565 _RS10335
Group Condition ABI39_RS10315 ABI39_RS10320 ABI39_RS10325 ABI39_RS10330 ABI39_RS10335
carbon source N-acetylneuraminic (C) -2.3 -1.0 -0.7 -0.0 +0.4
carbon source N-acetylneuraminic (C) -2.4 -1.1 -0.4 -0.1 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.2 +0.1 -2.2 -0.0 -0.1
carbon source Galactose 1-phosphate dipotassium salt (C) -0.0 -0.2 -0.3 +0.1 -1.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.1 +0.1 -1.2 -0.1 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.2 -0.1 -1.2 -0.1 -0.0
carbon source Galactose 1-phosphate dipotassium salt (C) +0.0 -0.0 -0.2 +0.1 -1.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.0 +0.1 -1.3 +0.0 +0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.1 -0.1 -1.0 +0.1 +0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.3 +0.0 -0.9 +0.1 +0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.2 +0.3 -0.9 -0.2 +0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.0 -0.0 -1.1 +0.2 +0.2
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.3 +0.1 -0.9 -0.0 -0.0
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.1 +0.0 -1.0 +0.3 +0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.9 +0.1 +0.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.3 +0.2 -0.6 +0.2 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.2 +0.3 -0.7 +0.3 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 -0.5 +0.6 -0.1 +0.1
carbon source amylopectin from maize (C) -0.0 -0.0 -0.8 +0.3 +0.6
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 -0.6 -0.0 +0.1 +0.6
carbon source Galactan from Potato (C) -0.0 -0.6 +0.4 +0.0 +0.4
carbon source Amylopectin from Potato (C) +0.1 +0.3 -0.6 +0.4 +0.0
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.3 +0.5 +0.0 +0.4
carbon source NAG 2.5 mg/ml (C) +0.2 -0.0 +1.0 -0.1 -0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 -0.2 +0.4 +0.1 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.3 +0.5 +0.6 +0.2
carbon source Galactan from Potato (C) +0.1 -0.1 +0.4 +0.2 +0.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.1 +0.7 +0.2 -0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.1 +1.3 -0.0 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.1 +1.5 +0.1 +0.2
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