Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS10085 and ABI39_RS10090 are separated by 7 nucleotidesABI39_RS10090 and ABI39_RS10095 are separated by 23 nucleotidesABI39_RS10095 and ABI39_RS10100 are separated by 15 nucleotidesABI39_RS10100 and ABI39_RS10105 are separated by 57 nucleotides ABI39_RS10085: ABI39_RS10085 - enoyl-ACP reductase, at 2,695,155 to 2,696,012 _RS10085 ABI39_RS10090: ABI39_RS10090 - hypothetical protein, at 2,696,020 to 2,697,021 _RS10090 ABI39_RS10095: ABI39_RS10095 - SAM-dependent methyltransferase, at 2,697,045 to 2,697,749 _RS10095 ABI39_RS10100: ABI39_RS10100 - hypothetical protein, at 2,697,765 to 2,698,754 _RS10100 ABI39_RS10105: ABI39_RS10105 - lipoyl synthase, at 2,698,812 to 2,699,666 _RS10105
Group Condition ABI39_RS10085 ABI39_RS10090 ABI39_RS10095 ABI39_RS10100 ABI39_RS10105
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -2.5 -2.4 -0.6 N.D. -1.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -2.8 -1.9 +0.1 N.D. -1.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) -3.0 -1.2 -0.2 N.D. -0.5
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -2.3 -0.7 -0.0 N.D. -1.5
carbon source amylopectin from maize (C) -4.1 -1.9 +0.4 N.D. +1.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -2.1 -1.2 +0.2 N.D. -1.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -1.8 -0.9 -0.5 N.D. -1.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -2.1 -0.2 -0.2 N.D. -1.7
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -1.4 -1.7 -0.1 N.D. -1.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 -2.0 -0.5 N.D. -0.4
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -1.6 -0.9 -0.3 N.D. -1.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.5 -0.1 -0.1 N.D. -2.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -1.5 -0.4 -0.1 N.D. -2.0
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.9 -0.2 -0.3 N.D. -1.4
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -1.5 -1.4 +0.0 N.D. -0.9
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -2.1 -0.9 -0.5 N.D. -0.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) -2.6 -1.0 -0.1 N.D. +0.1
carbon source N-acetylneuraminic (C) -2.6 -0.5 -0.3 N.D. -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.5 -0.5 +0.2 N.D. -2.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.8 -1.8 -0.1 N.D. +0.3
carbon source Pectin from apple; filtered 1 mg/ml (C) -1.9 -0.6 +0.2 N.D. -1.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.6 -0.1 -0.2 N.D. -1.5
carbon source D-Glucose 5 mg/ml (C) -2.0 -0.1 -0.2 N.D. -0.9
carbon source Amylopectin from Potato (C) -2.0 -1.5 -0.1 N.D. +1.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.5 -2.2 -0.4 N.D. +0.7
carbon source Amylopectin from Potato (C) -1.8 -1.2 -0.1 N.D. +0.7
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -1.5 -1.8 -0.3 N.D. +1.2
carbon source amylopectin from maize (C) -1.7 -1.9 +0.4 N.D. +1.0
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -1.3 -1.8 +0.0 N.D. +1.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.9 -1.4 +0.4 N.D. +0.9
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