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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS09975 and ABI39_RS09980 are separated by 59 nucleotides
ABI39_RS09980 and ABI39_RS09985 overlap by 4 nucleotides
ABI39_RS09985 and ABI39_RS09990 are separated by 108 nucleotides
ABI39_RS09990 and ABI39_RS09995 are separated by 82 nucleotides
ABI39_RS09975: ABI39_RS09975 - DUF1295 domain-containing protein, at 2,668,173 to 2,668,937
_RS09975
ABI39_RS09980: ABI39_RS09980 - NADH:flavin oxidoreductase, at 2,668,997 to 2,670,223
_RS09980
ABI39_RS09985: ABI39_RS09985 - SDR family NAD(P)-dependent oxidoreductase, at 2,670,220 to 2,671,080
_RS09985
ABI39_RS09990: ABI39_RS09990 - DMT family transporter, at 2,671,189 to 2,672,115
_RS09990
ABI39_RS09995: ABI39_RS09995 - AAA family ATPase, at 2,672,198 to 2,673,019
_RS09995
Group
Condition
ABI39
_RS09975
ABI39
_RS09980
ABI39
_RS09985
ABI39
_RS09990
ABI39
_RS09995
carbon source
D-Glucose 2.5 mg/ml (C)
+0.0
-0.1
-0.0
-0.1
-1.5
carbon source
D-Glucose 2.5 mg/ml (C)
-0.1
-0.0
+0.1
-0.2
-1.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-1.0
-0.4
-0.5
-0.0
+0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.5
+0.1
-0.5
-0.3
-0.3
carbon source
NAG 2.5 mg/ml (C)
-0.6
-0.3
+0.4
+0.1
-0.8
carbon source
D-Fructose 2.5 mg/ml (C)
-0.1
-0.2
+0.3
-0.1
-1.2
carbon source
D-Fructose 2.5 mg/ml (C)
-0.3
-0.0
+0.1
-0.1
-0.9
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.3
+0.2
-0.7
+0.1
-0.3
carbon source
Amylopectin from Potato (C)
+0.5
-0.0
-0.6
-0.1
-0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
+0.1
-0.4
-0.4
+0.3
carbon source
Mucin from porcine stomach type III (C)
+0.4
+0.1
-0.8
+0.0
+0.0
carbon source
D-Galactose 2.5 mg/ml (C)
-0.2
-0.2
+0.4
+0.1
-0.4
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-0.2
-0.0
-0.3
-0.1
+0.5
carbon source
amylopectin from maize (C)
+0.3
-0.1
-0.4
-0.5
+0.4
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.4
-0.1
-0.4
+0.1
-0.1
carbon source
beta-Cyclodextrin (C)
+0.6
-0.0
-0.4
-0.1
-0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.2
-0.2
+0.7
-0.3
-0.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.7
-0.1
-0.6
-0.2
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.6
+0.2
-0.3
+0.0
-0.5
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.4
+0.3
+0.5
-0.4
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.0
-0.1
-0.4
+0.8
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
+0.5
+0.1
-0.3
-0.3
+0.2
carbon source
D-Mannose (C)
+0.6
-0.1
+0.2
-0.4
+0.0
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.5
-0.1
-0.4
-0.1
+0.4
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.6
+0.1
-0.4
+0.2
-0.1
carbon source
Fructose-6-phosphate (C)
+0.5
-0.1
-0.0
+0.4
-0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.1
+0.0
+0.0
-0.2
+0.8
carbon source
Galactan from Potato (C)
+0.7
+0.1
-0.1
-0.3
+0.2
carbon source
amylopectin from maize (C)
+0.8
+0.1
-0.0
-0.2
+0.3
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.6
+0.2
+0.4
+0.1
+0.5
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