Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS09830 and ABI39_RS09835 are separated by 90 nucleotidesABI39_RS09835 and ABI39_RS09840 are separated by 81 nucleotidesABI39_RS09840 and ABI39_RS09845 overlap by 8 nucleotidesABI39_RS09845 and ABI39_RS09850 are separated by 186 nucleotides ABI39_RS09830: ABI39_RS09830 - methylmalonyl Co-A mutase-associated GTPase MeaB, at 2,639,731 to 2,640,828 _RS09830 ABI39_RS09835: ABI39_RS09835 - 6-phosphofructokinase, at 2,640,919 to 2,641,899 _RS09835 ABI39_RS09840: ABI39_RS09840 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 2,641,981 to 2,642,847 _RS09840 ABI39_RS09845: ABI39_RS09845 - (d)CMP kinase, at 2,642,840 to 2,643,529 _RS09845 ABI39_RS09850: ABI39_RS09850 - energy transducer TonB, at 2,643,716 to 2,644,399 _RS09850
Group Condition ABI39_RS09830 ABI39_RS09835 ABI39_RS09840 ABI39_RS09845 ABI39_RS09850
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -4.8 -0.4 N.D. -4.2 -4.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -6.0 +0.3 N.D. -4.0 -2.7
carbon source Xylan from Beechwood (C) -4.6 -0.1 N.D. -3.1 -3.9
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -2.1 +0.1 N.D. -4.0 -4.6
carbon source Xylan from Beechwood (C) -4.0 +0.1 N.D. -2.2 -4.3
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -2.2 +0.1 N.D. -3.8 -4.0
carbon source Pectin from apple; filtered 1 mg/ml (C) -2.7 -0.3 N.D. -3.1 -3.8
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.8 -0.1 N.D. -3.9 -4.0
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 -0.9 N.D. -4.2 -4.9
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -1.7 +0.1 N.D. -3.6 -4.4
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -2.0 -0.6 N.D. -3.5 -3.4
carbon source Pectin from apple; filtered 1 mg/ml (C) -2.6 +0.0 N.D. -4.4 -2.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.8 -0.5 N.D. -3.8 -2.8
carbon source N-acetylneuraminic (C) -1.1 -0.2 N.D. -3.0 -4.7
carbon source D-Glucose 5 mg/ml (C) -1.8 -0.3 N.D. -3.8 -2.8
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -1.6 -1.4 N.D. -3.5 -2.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.5 -0.0 N.D. -4.5 -2.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -1.4 +0.0 N.D. -3.9 -3.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) -1.0 -0.3 N.D. -3.4 -3.7
carbon source B-glucan from yeast (C) -3.0 -0.2 N.D. -3.1 -2.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -1.6 +0.2 N.D. -2.7 -4.3
carbon source Beta-Lactose (C) -0.8 -0.4 N.D. -2.7 -4.3
carbon source N-acetylneuraminic (C) -0.9 -0.3 N.D. -2.1 -4.9
carbon source Starch from potato (C) -0.6 -0.7 N.D. -3.0 -3.8
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.7 -0.7 N.D. -3.8 -3.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +2.9 -3.0 N.D. -4.2 -0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +2.7 -3.8 N.D. -3.9 +0.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +3.3 -3.3 N.D. -4.3 -0.4
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +2.8 -3.4 N.D. -4.4 +0.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +2.1 -2.9 N.D. -2.6 -0.7
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