Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS09695 and ABI39_RS09700 are separated by 137 nucleotidesABI39_RS09700 and ABI39_RS09705 are separated by 33 nucleotidesABI39_RS09705 and ABI39_RS09710 are separated by 90 nucleotidesABI39_RS09710 and ABI39_RS09715 are separated by 101 nucleotides ABI39_RS09695: ABI39_RS09695 - alanine--tRNA ligase, at 2,605,137 to 2,607,755 _RS09695 ABI39_RS09700: ABI39_RS09700 - M23 family metallopeptidase, at 2,607,893 to 2,608,861 _RS09700 ABI39_RS09705: ABI39_RS09705 - MerR family transcriptional regulator, at 2,608,895 to 2,609,242 _RS09705 ABI39_RS09710: ABI39_RS09710 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 2,609,333 to 2,611,603 _RS09710 ABI39_RS09715: ABI39_RS09715 - lytic transglycosylase domain-containing protein, at 2,611,705 to 2,612,967 _RS09715
Group Condition ABI39_RS09695 ABI39_RS09700 ABI39_RS09705 ABI39_RS09710 ABI39_RS09715
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. -1.5 N.D. N.D. +0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) N.D. -0.7 N.D. N.D. -0.3
carbon source Xylan from Beechwood (C) N.D. -0.4 N.D. N.D. -0.6
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) N.D. -0.5 N.D. N.D. -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) N.D. +0.4 N.D. N.D. -0.4
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) N.D. +0.9 N.D. N.D. -0.6
carbon source Starch from potato (C) N.D. +0.2 N.D. N.D. +0.5
carbon source D-Galactose (C) N.D. +0.1 N.D. N.D. +0.7
carbon source Glycogen; filtered 2.5 mg/ml (C) N.D. +0.5 N.D. N.D. +0.2
carbon source D-Fructose (C) N.D. +0.2 N.D. N.D. +0.6
carbon source D-Fructose (C) N.D. +0.1 N.D. N.D. +0.7
carbon source a-Cyclodextrin (C) N.D. +0.4 N.D. N.D. +0.4
carbon source D-Glucose (C) N.D. +0.1 N.D. N.D. +0.7
carbon source D-Galactose (C) N.D. +0.2 N.D. N.D. +0.6
carbon source Beta-Lactose 2.5 mg/ml (C) N.D. +0.6 N.D. N.D. +0.3
carbon source beta-Cyclodextrin (C) N.D. +0.3 N.D. N.D. +0.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.3 N.D. N.D. +0.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.1 N.D. N.D. +0.8
carbon source Starch from potato (C) N.D. +0.6 N.D. N.D. +0.3
carbon source D-Mannose (C) N.D. +0.2 N.D. N.D. +0.7
carbon source Beta-Lactose 2.5 mg/ml (C) N.D. +0.6 N.D. N.D. +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) N.D. +0.9 N.D. N.D. -0.0
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) N.D. +0.4 N.D. N.D. +0.6
carbon source D-Glucose (C) N.D. +0.3 N.D. N.D. +0.8
carbon source D-Mannose (C) N.D. +0.1 N.D. N.D. +0.9
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.4 N.D. N.D. +0.6
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. -0.1 N.D. N.D. +1.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. +1.0 N.D. N.D. +0.2
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen N.D. +0.0 N.D. N.D. +1.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) N.D. +1.1 N.D. N.D. +0.5
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