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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS09130 and ABI39_RS09135 overlap by 4 nucleotides
ABI39_RS09135 and ABI39_RS09140 are separated by 13 nucleotides
ABI39_RS09140 and ABI39_RS09145 are separated by 17 nucleotides
ABI39_RS09145 and ABI39_RS09150 are separated by 90 nucleotides
ABI39_RS09130: ABI39_RS09130 - beta-glycosidase, at 2,454,185 to 2,457,220
_RS09130
ABI39_RS09135: ABI39_RS09135 - beta-glycosidase, at 2,457,217 to 2,460,585
_RS09135
ABI39_RS09140: ABI39_RS09140 - DUF4968 domain-containing protein, at 2,460,599 to 2,462,983
_RS09140
ABI39_RS09145: ABI39_RS09145 - acetylxylan esterase, at 2,463,001 to 2,465,001
_RS09145
ABI39_RS09150: ABI39_RS09150 - cupin domain-containing protein, at 2,465,092 to 2,465,583
_RS09150
Group
Condition
ABI39
_RS09130
ABI39
_RS09135
ABI39
_RS09140
ABI39
_RS09145
ABI39
_RS09150
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
-0.2
-0.4
-0.3
-0.7
carbon source
Galactan from Potato (C)
+0.1
-0.0
-0.1
-0.2
-0.9
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
+0.0
-0.1
-0.2
-0.8
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.0
-0.2
+0.0
-0.1
-0.7
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.0
-0.1
+0.0
+0.1
-0.8
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.0
-0.0
+0.1
+0.0
-0.9
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.1
+0.3
-1.2
carbon source
Starch from potato (C)
-0.1
-0.1
+0.0
-0.1
-0.4
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
-0.0
-0.1
+0.1
-0.1
-0.5
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
+0.2
+0.0
+0.0
-0.0
-0.7
carbon source
Galactan from Potato (C)
+0.2
-0.0
+0.2
-0.1
-0.6
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.0
-0.0
+0.1
+0.2
-0.4
carbon source
Amylopectin from Potato (C)
-0.1
-0.0
-0.2
-0.2
+0.6
carbon source
Amylopectin from Potato (C)
-0.2
-0.1
-0.1
-0.2
+0.9
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
-0.1
-0.1
-0.2
+0.7
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.1
-0.1
-0.1
+0.1
+0.6
carbon source
D-Fructose 2.5 mg/ml (C)
-0.0
-0.1
-0.0
-0.1
+0.7
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.0
+0.4
-0.1
+0.2
carbon source
polygalacturonic (ultrapure) (C)
-0.1
-0.1
-0.0
+0.0
+0.9
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
-0.1
+0.3
-0.0
+0.7
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.1
+0.0
+0.1
-0.0
+0.7
carbon source
D-Glucose (C)
+0.0
+0.1
+0.1
-0.0
+0.5
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
-0.1
+0.0
+0.9
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.1
+0.1
+0.0
+0.1
+0.5
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
-0.1
+0.2
+0.0
+0.6
carbon source
Mucin from porcine stomach,Type II (C)
+0.1
-0.0
-0.1
-0.1
+1.0
carbon source
amylopectin from maize (C)
+0.1
+0.1
+0.1
+0.3
+0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.1
+0.1
-0.2
+0.0
+0.8
carbon source
N-acetylneuraminic (C)
-0.0
+0.1
+0.1
+0.0
+0.8
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.1
-0.0
+0.0
-0.0
+1.0
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