Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS09130 and ABI39_RS09135 overlap by 4 nucleotidesABI39_RS09135 and ABI39_RS09140 are separated by 13 nucleotidesABI39_RS09140 and ABI39_RS09145 are separated by 17 nucleotidesABI39_RS09145 and ABI39_RS09150 are separated by 90 nucleotides ABI39_RS09130: ABI39_RS09130 - beta-glycosidase, at 2,454,185 to 2,457,220 _RS09130 ABI39_RS09135: ABI39_RS09135 - beta-glycosidase, at 2,457,217 to 2,460,585 _RS09135 ABI39_RS09140: ABI39_RS09140 - DUF4968 domain-containing protein, at 2,460,599 to 2,462,983 _RS09140 ABI39_RS09145: ABI39_RS09145 - acetylxylan esterase, at 2,463,001 to 2,465,001 _RS09145 ABI39_RS09150: ABI39_RS09150 - cupin domain-containing protein, at 2,465,092 to 2,465,583 _RS09150
Group Condition ABI39_RS09130 ABI39_RS09135 ABI39_RS09140 ABI39_RS09145 ABI39_RS09150
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 -0.2 -0.4 -0.3 -0.7
carbon source Galactan from Potato (C) +0.1 -0.0 -0.1 -0.2 -0.9
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 +0.0 -0.1 -0.2 -0.8
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 -0.2 +0.0 -0.1 -0.7
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.0 -0.1 +0.0 +0.1 -0.8
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.0 -0.0 +0.1 +0.0 -0.9
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.1 +0.3 -1.2
carbon source Starch from potato (C) -0.1 -0.1 +0.0 -0.1 -0.4
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -0.0 -0.1 +0.1 -0.1 -0.5
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.2 +0.0 +0.0 -0.0 -0.7
carbon source Galactan from Potato (C) +0.2 -0.0 +0.2 -0.1 -0.6
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.0 -0.0 +0.1 +0.2 -0.4
carbon source Amylopectin from Potato (C) -0.1 -0.0 -0.2 -0.2 +0.6
carbon source Amylopectin from Potato (C) -0.2 -0.1 -0.1 -0.2 +0.9
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.1 -0.1 -0.2 +0.7
carbon source Beta-Lactose 2.5 mg/ml (C) -0.1 -0.1 -0.1 +0.1 +0.6
carbon source D-Fructose 2.5 mg/ml (C) -0.0 -0.1 -0.0 -0.1 +0.7
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.0 +0.4 -0.1 +0.2
carbon source polygalacturonic (ultrapure) (C) -0.1 -0.1 -0.0 +0.0 +0.9
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.3 -0.0 +0.7
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 +0.0 +0.1 -0.0 +0.7
carbon source D-Glucose (C) +0.0 +0.1 +0.1 -0.0 +0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.1 +0.0 +0.9
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 +0.1 +0.0 +0.1 +0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.1 +0.2 +0.0 +0.6
carbon source Mucin from porcine stomach,Type II (C) +0.1 -0.0 -0.1 -0.1 +1.0
carbon source amylopectin from maize (C) +0.1 +0.1 +0.1 +0.3 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 -0.2 +0.0 +0.8
carbon source N-acetylneuraminic (C) -0.0 +0.1 +0.1 +0.0 +0.8
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +0.0 -0.0 +1.0
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