Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS09065 and ABI39_RS09070 are separated by 3 nucleotidesABI39_RS09070 and ABI39_RS09075 are separated by 407 nucleotidesABI39_RS09075 and ABI39_RS09080 are separated by 247 nucleotidesABI39_RS09080 and ABI39_RS09085 are separated by 30 nucleotides ABI39_RS09065: ABI39_RS09065 - TonB-dependent receptor, at 2,426,389 to 2,429,619 _RS09065 ABI39_RS09070: ABI39_RS09070 - RagB/SusD family nutrient uptake outer membrane protein, at 2,429,623 to 2,431,776 _RS09070 ABI39_RS09075: ABI39_RS09075 - SUMF1/EgtB/PvdO family nonheme iron enzyme, at 2,432,184 to 2,434,205 _RS09075 ABI39_RS09080: ABI39_RS09080 - TonB-dependent receptor, at 2,434,453 to 2,437,863 _RS09080 ABI39_RS09085: ABI39_RS09085 - RagB/SusD family nutrient uptake outer membrane protein, at 2,437,894 to 2,439,930 _RS09085
Group Condition ABI39_RS09065 ABI39_RS09070 ABI39_RS09075 ABI39_RS09080 ABI39_RS09085
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -1.2 -1.5 -0.0 -0.1 -0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -1.3 -1.0 -0.0 -0.1 -0.1
carbon source Pectin from apple; filtered 1 mg/ml (C) -1.2 -1.1 -0.0 -0.1 -0.0
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.8 -0.9 -0.2 -0.1 -0.2
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.8 -1.0 +0.0 -0.1 -0.2
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -0.9 -0.8 -0.1 -0.1 -0.0
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -0.8 -0.7 -0.1 -0.0 -0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.9 -0.9 +0.1 +0.0 -0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.7 -0.8 +0.1 -0.1 -0.2
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.7 -0.7 +0.0 +0.0 -0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.7 -0.6 +0.1 -0.1 -0.2
carbon source polygalacturonic (ultrapure) (C) -0.6 -0.7 -0.0 +0.0 -0.1
carbon source polygalacturonic (ultrapure) (C) -0.5 -0.8 -0.0 +0.0 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 -0.4 -0.2 -0.1 -0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.2 -0.5 -0.0 -0.1 -0.3
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.1 +0.0 -0.2 -0.3 -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.4 -0.0 -0.4 +0.0 -0.3
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.4 -0.3 -0.1 -0.1 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 -0.2 -0.2 -0.2 -0.0
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.2 -0.3 +0.0 -0.0 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.4 -0.1 -0.0 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.2 -0.1 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 -0.2 +0.1 -0.0 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.2 +0.0 +0.1 -0.3
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.0 +0.2 -0.1 -0.1 -0.4
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.4 -0.1 +0.2
carbon source Galactan from Potato (C) +0.3 -0.2 +0.1 +0.0 -0.4
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.3 +0.3 -0.1 -0.0 +0.1
carbon source amylopectin from maize (C) -0.2 +0.2 -0.1 -0.0 +0.3
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.3 +0.3 -0.1 -0.1 +0.3
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ABI39_RS09065
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ABI39_RS09070
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