Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS21935 and ABI39_RS08670 are separated by 94 nucleotidesABI39_RS08670 and ABI39_RS08675 are separated by 118 nucleotidesABI39_RS08675 and ABI39_RS08680 are separated by 478 nucleotidesABI39_RS08680 and ABI39_RS08685 are separated by 12 nucleotides ABI39_RS21935: ABI39_RS21935 - DUF1573 domain-containing protein, at 2,317,394 to 2,317,681 _RS21935 ABI39_RS08670: ABI39_RS08670 - RNA polymerase sigma-70 factor, at 2,317,776 to 2,318,363 _RS08670 ABI39_RS08675: ABI39_RS08675 - FecR domain-containing protein, at 2,318,482 to 2,319,426 _RS08675 ABI39_RS08680: ABI39_RS08680 - site-specific integrase, at 2,319,905 to 2,321,140 _RS08680 ABI39_RS08685: ABI39_RS08685 - hypothetical protein, at 2,321,153 to 2,321,515 _RS08685
Group Condition ABI39_RS21935 ABI39_RS08670 ABI39_RS08675 ABI39_RS08680 ABI39_RS08685
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.7 +0.3 +0.6 +0.0 -2.0
carbon source Galactan from Potato (C) -0.3 +0.0 +0.6 -0.2 -1.6
carbon source Galactan from Potato (C) -0.2 +0.7 -0.6 -0.3 -0.9
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.3 +0.1 -0.4 -1.0
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.2 +0.2 +0.2 +0.3 -0.8
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.5 +0.6 +0.1 -0.0 -0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.5 +0.4 +0.4 -0.3 -0.3
carbon source NAG 2.5 mg/ml (C) -0.2 +0.6 +0.3 +0.1 -0.5
carbon source NAG 2.5 mg/ml (C) +0.2 +0.3 +0.4 +0.1 -0.6
carbon source Mannose-6-Phosphate (C) -0.5 +1.3 -0.0 -0.0 -0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.5 +0.4 +0.3 +0.1 -0.6
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.1 +1.3 -0.1 -0.2 +0.0
carbon source Glucose-6-Phosphate (C) -0.0 +1.3 -0.1 -0.3 +0.1
carbon source Beta-Lactose 2.5 mg/ml (C) +0.4 +0.7 +0.4 +0.3 -0.8
carbon source amylopectin from maize (C) -0.7 +0.7 +0.1 +0.4 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.3 +0.7 +0.1 +0.1 +0.5
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.3 +0.3 +0.5 +0.5 +0.3
carbon source Glucose-6-Phosphate (C) -0.3 +1.4 -0.0 -0.0 +0.1
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.3 +0.4 +0.7
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.0 +0.4 +1.0
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.1 +0.4 +0.3 +0.1 +0.8
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.4 +0.2 +0.3 +0.5
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.4 +0.3 +0.1 +0.2 +0.7
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.0 +1.2 -0.1 +0.3 +0.3
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.1 +1.1 -0.1 -0.0 +0.5
carbon source Fructose-6-phosphate (C) +0.0 +1.5 -0.2 +0.1 +0.3
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.3 +0.3 +0.9
carbon source Mannose-6-Phosphate (C) +0.2 +1.0 +0.2 +0.1 +0.5
carbon source Fructose-6-phosphate (C) -0.1 +1.7 -0.1 +0.2 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.1 +1.2 -0.4 +0.3 +1.4
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