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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS21935 and ABI39_RS08670 are separated by 94 nucleotides
ABI39_RS08670 and ABI39_RS08675 are separated by 118 nucleotides
ABI39_RS08675 and ABI39_RS08680 are separated by 478 nucleotides
ABI39_RS08680 and ABI39_RS08685 are separated by 12 nucleotides
ABI39_RS21935: ABI39_RS21935 - DUF1573 domain-containing protein, at 2,317,394 to 2,317,681
_RS21935
ABI39_RS08670: ABI39_RS08670 - RNA polymerase sigma-70 factor, at 2,317,776 to 2,318,363
_RS08670
ABI39_RS08675: ABI39_RS08675 - FecR domain-containing protein, at 2,318,482 to 2,319,426
_RS08675
ABI39_RS08680: ABI39_RS08680 - site-specific integrase, at 2,319,905 to 2,321,140
_RS08680
ABI39_RS08685: ABI39_RS08685 - hypothetical protein, at 2,321,153 to 2,321,515
_RS08685
Group
Condition
ABI39
_RS21935
ABI39
_RS08670
ABI39
_RS08675
ABI39
_RS08680
ABI39
_RS08685
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.7
+0.3
+0.6
+0.0
-2.0
carbon source
Galactan from Potato (C)
-0.3
+0.0
+0.6
-0.2
-1.6
carbon source
Galactan from Potato (C)
-0.2
+0.7
-0.6
-0.3
-0.9
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
+0.3
+0.1
-0.4
-1.0
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.2
+0.2
+0.2
+0.3
-0.8
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.5
+0.6
+0.1
-0.0
-0.5
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.5
+0.4
+0.4
-0.3
-0.3
carbon source
NAG 2.5 mg/ml (C)
-0.2
+0.6
+0.3
+0.1
-0.5
carbon source
NAG 2.5 mg/ml (C)
+0.2
+0.3
+0.4
+0.1
-0.6
carbon source
Mannose-6-Phosphate (C)
-0.5
+1.3
-0.0
-0.0
-0.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.5
+0.4
+0.3
+0.1
-0.6
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.1
+1.3
-0.1
-0.2
+0.0
carbon source
Glucose-6-Phosphate (C)
-0.0
+1.3
-0.1
-0.3
+0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.4
+0.7
+0.4
+0.3
-0.8
carbon source
amylopectin from maize (C)
-0.7
+0.7
+0.1
+0.4
+0.4
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.3
+0.7
+0.1
+0.1
+0.5
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.3
+0.3
+0.5
+0.5
+0.3
carbon source
Glucose-6-Phosphate (C)
-0.3
+1.4
-0.0
-0.0
+0.1
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-0.2
+0.1
+0.3
+0.4
+0.7
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.0
+0.4
+1.0
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.1
+0.4
+0.3
+0.1
+0.8
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.2
+0.4
+0.2
+0.3
+0.5
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.4
+0.3
+0.1
+0.2
+0.7
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.0
+1.2
-0.1
+0.3
+0.3
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+0.1
+1.1
-0.1
-0.0
+0.5
carbon source
Fructose-6-phosphate (C)
+0.0
+1.5
-0.2
+0.1
+0.3
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
+0.1
+0.1
+0.3
+0.3
+0.9
carbon source
Mannose-6-Phosphate (C)
+0.2
+1.0
+0.2
+0.1
+0.5
carbon source
Fructose-6-phosphate (C)
-0.1
+1.7
-0.1
+0.2
+0.3
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.1
+1.2
-0.4
+0.3
+1.4
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