Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS08635 and ABI39_RS08640 are separated by 158 nucleotidesABI39_RS08640 and ABI39_RS08645 are separated by 12 nucleotidesABI39_RS08645 and ABI39_RS08650 are separated by 253 nucleotidesABI39_RS08650 and ABI39_RS08655 are separated by 144 nucleotides ABI39_RS08635: ABI39_RS08635 - glycosyl hydrolase 115 family protein, at 2,305,353 to 2,307,659 _RS08635 ABI39_RS08640: ABI39_RS08640 - RagB/SusD family nutrient uptake outer membrane protein, at 2,307,818 to 2,309,512 _RS08640 ABI39_RS08645: ABI39_RS08645 - TonB-dependent receptor, at 2,309,525 to 2,312,746 _RS08645 ABI39_RS08650: ABI39_RS08650 - DUF4974 domain-containing protein, at 2,313,000 to 2,314,013 _RS08650 ABI39_RS08655: ABI39_RS08655 - RNA polymerase sigma-70 factor, at 2,314,158 to 2,314,724 _RS08655
Group Condition ABI39_RS08635 ABI39_RS08640 ABI39_RS08645 ABI39_RS08650 ABI39_RS08655
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.0 +0.2 +0.0 -0.9 -0.6
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 -0.1 -0.3 -0.5
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 -0.0 -0.5 -0.2
carbon source a-Cyclodextrin (C) -0.0 +0.0 -0.1 -0.1 -0.8
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 -0.0 +0.1 -0.4 -0.3
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.1 -0.0 -0.8 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +0.2 -0.0 -0.3 -0.6
carbon source Galactan from Potato (C) +0.2 +0.2 -0.1 -0.5 -0.4
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.0 +0.2 -0.1 -0.3 -0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.1 -0.2 -0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.0 -0.1 +0.1 +0.1 -0.7
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.0 +0.1 +0.1 -0.3 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 +0.2 -0.1 -0.1 -0.5
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.0 +0.0 +0.1 -0.7 +0.4
carbon source amylopectin from maize (C) -0.1 +0.0 -0.3 -0.2 +0.8
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -0.2 -0.0 -0.1 +0.1 +0.5
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.0 +0.1 -0.0 -0.3 +0.8
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.3 +0.1 -0.1 +0.1 +0.8
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.2 -0.0 +0.1 +0.3 +0.4
carbon source Beta-Lactose 2.5 mg/ml (C) -0.1 -0.1 +0.2 +0.3 +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.0 +0.1 -0.1 +0.0 +0.6
carbon source D-Fructose 2.5 mg/ml (C) -0.0 +0.1 +0.2 +0.3 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.1 +0.1 -0.0 +0.1 +0.9
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.0 +0.2 +0.8
carbon source D-Glucose 2.5 mg/ml (C) +0.1 +0.1 +0.2 -0.1 +0.6
carbon source Amylopectin from Potato (C) -0.0 -0.0 -0.1 +0.5 +0.6
carbon source Pectin from apple; autoclaved 2.5 mg/ml (C) +0.0 +0.0 -0.0 +0.3 +0.9
carbon source D-Glucose 2.5 mg/ml (C) +0.1 +0.1 +0.3 +0.3 +0.5
carbon source D-Fructose 2.5 mg/ml (C) +0.1 +0.1 +0.2 +0.2 +0.6
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.0 +0.2 -0.1 +0.6 +0.5
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