Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS07375 and ABI39_RS07385 are separated by 1214 nucleotidesABI39_RS07385 and ABI39_RS07395 are separated by 1223 nucleotidesABI39_RS07395 and ABI39_RS07400 are separated by 15 nucleotidesABI39_RS07400 and ABI39_RS07405 are separated by 17 nucleotides ABI39_RS07375: ABI39_RS07375 - PepSY domain-containing protein, at 2,017,379 to 2,018,518 _RS07375 ABI39_RS07385: ABI39_RS07385 - outer membrane beta-barrel protein, at 2,019,733 to 2,020,038 _RS07385 ABI39_RS07395: ABI39_RS07395 - B12-binding domain-containing radical SAM protein, at 2,021,262 to 2,022,899 _RS07395 ABI39_RS07400: ABI39_RS07400 - GNAT family N-acetyltransferase, at 2,022,915 to 2,023,436 _RS07400 ABI39_RS07405: ABI39_RS07405 - GNAT family N-acetyltransferase, at 2,023,454 to 2,023,885 _RS07405
Group Condition ABI39_RS07375 ABI39_RS07385 ABI39_RS07395 ABI39_RS07400 ABI39_RS07405
carbon source polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C) -0.1 -0.3 -0.4 -0.2 -0.9
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 -0.7 +0.1 -0.4 -1.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.3 -0.3 -0.3 -0.5 -0.6
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.1 -0.4 +0.1 +0.2 -0.8
carbon source Galactan from Potato (C) -0.1 -0.2 +0.1 +0.1 -0.7
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.3 -0.4 -0.1 -0.1 -0.5
carbon source Dextrin from potato starch; autoclaved 2.5 mg/ml (C) -0.1 -0.3 -0.0 +0.2 -0.5
carbon source amylopectin from maize (C) +0.0 -0.1 +0.2 +0.2 -1.0
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.1 -0.4 +0.2 -0.0 -0.7
carbon source D-Glucose 5 mg/ml (C) +0.1 -0.3 +0.2 +0.1 -0.8
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.4 +0.1 -0.0 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 -0.6 +0.1 +0.3 -0.3
carbon source Beta-Lactose 2.5 mg/ml (C) +0.1 -0.2 +0.1 +0.2 -0.6
carbon source amylopectin from maize (C) +0.4 -0.0 +0.3 -0.0 -0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 -0.7 +0.5 +0.2 +0.4
carbon source Galactan from Potato (C) +0.1 +0.3 +0.4 +0.1 -0.7
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 -0.3 +0.3 -0.1 +0.6
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.2 -0.5 +0.3 +0.1 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.2 +0.3 +0.2 -0.1 +0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 +0.4 +0.2 -0.3 +0.5
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) +0.2 -0.3 +0.1 +0.3 +0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.4 -0.6 -0.2 +0.4 +0.7
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 -0.0 -0.1 +0.1 +0.9
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.3 -0.4 +0.3 +0.5 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 +0.0 +0.2 +0.1 +1.0
carbon source Amylopectin from Potato (C) +0.3 -0.2 +0.1 +0.5 +0.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.0 +0.1 +0.6 +0.3 +0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.2 +0.3 -0.1 +0.8
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.0 +0.2 -0.2 +0.1 +1.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.4 -0.1 +0.1 +0.2 +1.3
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