Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS07365 and ABI39_RS07370 are separated by 34 nucleotidesABI39_RS07370 and ABI39_RS07375 are separated by 8 nucleotidesABI39_RS07375 and ABI39_RS07385 are separated by 1214 nucleotidesABI39_RS07385 and ABI39_RS07395 are separated by 1223 nucleotides ABI39_RS07365: ABI39_RS07365 - TonB-dependent receptor, at 2,013,569 to 2,015,956 _RS07365 ABI39_RS07370: ABI39_RS07370 - DUF4374 domain-containing protein, at 2,015,991 to 2,017,370 _RS07370 ABI39_RS07375: ABI39_RS07375 - PepSY domain-containing protein, at 2,017,379 to 2,018,518 _RS07375 ABI39_RS07385: ABI39_RS07385 - outer membrane beta-barrel protein, at 2,019,733 to 2,020,038 _RS07385 ABI39_RS07395: ABI39_RS07395 - B12-binding domain-containing radical SAM protein, at 2,021,262 to 2,022,899 _RS07395
Group Condition ABI39_RS07365 ABI39_RS07370 ABI39_RS07375 ABI39_RS07385 ABI39_RS07395
carbon source D-Mannose 2.5 mg/ml (C) -0.3 -0.4 -0.1 -0.3 -0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.4 -0.3 +0.2 -0.2 -0.1
carbon source D-Xylose 2.5 mg/ml (C) -0.2 -0.4 +0.1 -0.3 +0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 -0.2 +0.3 -0.3 -0.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.2 -0.7 +0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.1 -0.4 +0.2 -0.4 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.4 -0.6 -0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.3 -0.4 -0.1
carbon source Mucin from porcine stomach,Type II; autoclaved 2.5 mg/ml (C) -0.2 -0.3 +0.2 -0.3 +0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.0 -0.4 +0.3 -0.3 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.0 -0.1 +0.3 -0.3 -0.3
carbon source Amylopectin from Potato (C) -0.1 -0.5 +0.3 -0.2 +0.1
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.0 -0.3 +0.3 -0.4 +0.3
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 -0.4 -0.2 +0.0 +0.2
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.1 +0.2 +0.2 -0.5 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.1 -0.0 +0.2 -0.5 +0.3
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.3 +0.3 -0.0 -0.7 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 +0.5 -0.2 -0.7 +0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.3 +0.5 -0.0 -0.6 +0.1
carbon source amylopectin from maize (C) -0.2 +0.4 +0.0 -0.1 +0.2
carbon source amylopectin from maize (C) -0.5 +0.2 +0.4 -0.0 +0.3
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.4 +0.1 -0.3 +0.3
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 +0.4 -0.2 -0.1 +0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 -0.2 -0.0 +0.4 +0.2
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.3 +0.6 -0.1 -0.4 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.4 +0.3 +0.1 -0.2 +0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 +0.6 +0.1 -0.4 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.4 +0.9 -0.2 -0.5 +0.3
carbon source Galactan from Potato (C) +0.0 +0.2 +0.1 +0.3 +0.4
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.0 +0.6 -0.0 +0.1 +0.6
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ABI39_RS07365
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ABI39_RS07370
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