Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS07290 and ABI39_RS23010 are separated by 169 nucleotidesABI39_RS23010 and ABI39_RS07300 are separated by 7 nucleotidesABI39_RS07300 and ABI39_RS07305 are separated by 139 nucleotidesABI39_RS07305 and ABI39_RS21850 are separated by 122 nucleotides ABI39_RS07290: ABI39_RS07290 - helix-turn-helix domain-containing protein, at 2,001,851 to 2,002,165 _RS07290 ABI39_RS23010: ABI39_RS23010 - hypothetical protein, at 2,002,335 to 2,003,276 _RS23010 ABI39_RS07300: ABI39_RS07300 - integrase catalytic domain-containing protein, at 2,003,284 to 2,004,621 _RS07300 ABI39_RS07305: ABI39_RS07305 - recombinase family protein, at 2,004,761 to 2,006,356 _RS07305 ABI39_RS21850: ABI39_RS21850 - ATP-binding protein, at 2,006,479 to 2,007,097 _RS21850
Group Condition ABI39_RS07290 ABI39_RS23010 ABI39_RS07300 ABI39_RS07305 ABI39_RS21850
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -1.6 -0.3 -0.1 -0.3 +0.5
carbon source Beta-Lactose 2.5 mg/ml (C) -0.3 -0.0 -0.1 +0.1 -1.1
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.2 -0.7 +0.0 -0.1 -0.2
carbon source NAG 2.5 mg/ml (C) -0.8 +0.1 -0.1 -0.0 -0.3
carbon source NAG 2.5 mg/ml (C) -1.1 +0.2 -0.1 +0.1 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -1.0 +0.1 +0.1 -0.1 -0.1
carbon source amylopectin from maize (C) -0.4 -0.3 +0.0 +0.1 -0.4
carbon source Xylan from corn core; autoclaved 2.5 mg/ml (C) +0.4 -0.3 +0.0 -0.1 -0.9
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.7 +0.2 -0.0 +0.1 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.4 -0.4 +0.1 +0.3 -0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -1.0 +0.4 +0.1 +0.1 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.8 -0.4 +0.2 +0.3 +0.2
carbon source Galactan from Potato (C) +0.4 -0.7 +0.1 +0.1 -0.5
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.2 -0.7 +0.1 +0.1 -0.3
carbon source D-Fructose (C) +0.4 -0.0 +0.1 +0.0 -0.8
carbon source Galactan from Potato (C) -0.2 -0.3 +0.2 +0.4 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.4 -0.3 -0.1 +0.1 +0.6
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 -0.2 -0.2 -0.1 +0.6
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.0 -0.7 -0.0 +0.0 +0.7
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 -0.6 -0.0 +0.1 -0.0
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.6 -0.5 +0.0 -0.1 +0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.4 -0.4 +0.0 -0.1 +0.5
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +1.3 -0.7 -0.0 +0.1 +0.0
carbon source B-glucan from yeast (C) +0.9 -0.2 +0.0 -0.2 +0.3
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.9 -0.5 -0.1 +0.0 +0.5
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.8 -0.2 +0.1 +0.2 +0.1
carbon source B-glucan from yeast (C) +1.0 -0.2 +0.1 -0.0 +0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.1 -0.2 +0.0 +0.3 +0.8
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +1.5 -0.3 +0.1 -0.0 +0.2
carbon source Amylopectin from Potato (C) +0.0 +0.3 +0.1 -0.1 +1.1
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ABI39_RS07290
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ABI39_RS23010
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ABI39_RS07305
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ABI39_RS21850
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