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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS07255 and ABI39_RS07260 are separated by 433 nucleotides
ABI39_RS07260 and ABI39_RS07265 are separated by 270 nucleotides
ABI39_RS07265 and ABI39_RS07270 are separated by 3 nucleotides
ABI39_RS07270 and ABI39_RS07275 are separated by 285 nucleotides
ABI39_RS07255: ABI39_RS07255 - site-specific integrase, at 1,992,212 to 1,993,435
_RS07255
ABI39_RS07260: ABI39_RS07260 - Fic family protein, at 1,993,869 to 1,994,678
_RS07260
ABI39_RS07265: ABI39_RS07265 - DUF2971 domain-containing protein, at 1,994,949 to 1,995,719
_RS07265
ABI39_RS07270: ABI39_RS07270 - tetratricopeptide repeat protein, at 1,995,723 to 1,997,567
_RS07270
ABI39_RS07275: ABI39_RS07275 - hypothetical protein, at 1,997,853 to 1,999,256
_RS07275
Group
Condition
ABI39
_RS07255
ABI39
_RS07260
ABI39
_RS07265
ABI39
_RS07270
ABI39
_RS07275
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.6
-0.3
+0.1
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.2
-0.5
-0.1
-0.0
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.4
-0.4
-0.2
-0.0
+0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.2
-0.3
-0.3
-0.1
+0.2
carbon source
Beta-Lactose 2.5 mg/ml (C)
-0.1
-0.4
-0.3
-0.0
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
+0.2
-0.6
-0.2
-0.1
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.4
-0.3
+0.1
+0.1
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.5
+0.3
+0.3
-0.0
-0.6
carbon source
N-acetylneuraminic (C)
-0.3
-0.3
-0.1
-0.1
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.2
+0.2
-0.0
+0.1
-0.5
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.3
-0.2
+0.1
+0.1
-0.2
carbon source
D-Galactose (C)
+0.2
-0.5
+0.0
+0.0
-0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.3
+0.3
-0.1
-0.1
-0.3
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.1
-0.6
+0.1
+0.0
+0.0
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
-0.3
-0.1
-0.0
+0.3
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.2
+0.6
-0.0
+0.0
-0.6
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.3
+0.4
-0.2
-0.1
-0.1
carbon source
Galactan from Potato (C)
+0.1
+0.4
-0.1
+0.1
-0.7
carbon source
Mucin from porcine stomach type III (C)
+0.1
-0.5
+0.1
+0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.2
+0.3
+0.1
+0.1
-0.4
carbon source
Glycogen; filtered 2.5 mg/ml (C)
-0.1
-0.3
+0.3
+0.1
-0.1
carbon source
NAG 2.5 mg/ml (C)
+0.0
+0.2
-0.4
-0.1
+0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
-0.4
+0.7
+0.1
-0.1
-0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
+0.9
+0.1
-0.1
-0.8
carbon source
Galactan from Potato (C)
-0.2
+0.4
+0.0
+0.3
-0.4
carbon source
amylopectin from maize (C)
-0.3
+0.5
+0.3
-0.2
-0.1
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.1
+0.6
-0.2
+0.1
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.3
+0.5
-0.2
+0.1
+0.3
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.6
+0.6
-0.1
+0.3
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.4
+1.3
+0.2
+0.1
-0.4
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