Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS07030 and ABI39_RS07035 are separated by 56 nucleotidesABI39_RS07035 and ABI39_RS07040 are separated by 102 nucleotidesABI39_RS07040 and ABI39_RS07045 are separated by 57 nucleotidesABI39_RS07045 and ABI39_RS07050 are separated by 20 nucleotides ABI39_RS07030: ABI39_RS07030 - pyridoxamine kinase, at 1,943,411 to 1,944,283 _RS07030 ABI39_RS07035: ABI39_RS07035 - glutamate racemase, at 1,944,340 to 1,945,185 _RS07035 ABI39_RS07040: ABI39_RS07040 - OmpH family outer membrane protein, at 1,945,288 to 1,945,791 _RS07040 ABI39_RS07045: ABI39_RS07045 - OmpH family outer membrane protein, at 1,945,849 to 1,946,364 _RS07045 ABI39_RS07050: ABI39_RS07050 - outer membrane protein assembly factor BamA, at 1,946,385 to 1,949,024 _RS07050
Group Condition ABI39_RS07030 ABI39_RS07035 ABI39_RS07040 ABI39_RS07045 ABI39_RS07050
carbon source amylopectin from maize (C) +0.2 N.D. N.D. -1.5 N.D.
carbon source D-Mannose 2.5 mg/ml (C) -0.3 N.D. N.D. +0.6 N.D.
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.3 N.D. N.D. +0.6 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.3 N.D. N.D. +0.8 N.D.
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.1 N.D. N.D. +0.6 N.D.
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.1 N.D. N.D. +0.8 N.D.
carbon source (+)-Arabinogalactan (C) -0.1 N.D. N.D. +0.8 N.D.
carbon source Fructose-6-phosphate (C) -0.1 N.D. N.D. +0.9 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.3 N.D. N.D. +0.5 N.D.
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.3 N.D. N.D. +0.5 N.D.
carbon source (+)-Arabinogalactan (C) -0.0 N.D. N.D. +0.8 N.D.
carbon source D-Raffinose 2.5 mg/ml (C) +0.0 N.D. N.D. +0.8 N.D.
carbon source D-Raffinose 2.5 mg/ml (C) +0.1 N.D. N.D. +0.7 N.D.
carbon source Galactan from Potato (C) +0.0 N.D. N.D. +0.8 N.D.
carbon source NAG 2.5 mg/ml (C) +0.1 N.D. N.D. +0.7 N.D.
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 N.D. N.D. +0.7 N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.0 N.D. N.D. +0.9 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.6 N.D. N.D. +0.4 N.D.
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 N.D. N.D. +0.6 N.D.
carbon source NAG 2.5 mg/ml (C) +0.3 N.D. N.D. +0.8 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.7 N.D. N.D. +0.5 N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 N.D. N.D. +1.0 N.D.
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 N.D. N.D. +0.8 N.D.
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.5 N.D. N.D. +0.8 N.D.
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.2 N.D. N.D. +1.1 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.5 N.D. N.D. +0.9 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 N.D. N.D. +1.1 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.5 N.D. N.D. +1.0 N.D.
carbon source Beta-Lactose 2.5 mg/ml (C) +0.3 N.D. N.D. +1.7 N.D.
carbon source Beta-Lactose 2.5 mg/ml (C) +0.2 N.D. N.D. +2.0 N.D.
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