Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS06790 and ABI39_RS06795 overlap by 4 nucleotidesABI39_RS06795 and ABI39_RS06800 overlap by 4 nucleotidesABI39_RS06800 and ABI39_RS06805 are separated by 5 nucleotidesABI39_RS06805 and ABI39_RS06810 are separated by 8 nucleotides ABI39_RS06790: ABI39_RS06790 - site-specific DNA-methyltransferase, at 1,883,521 to 1,885,374 _RS06790 ABI39_RS06795: ABI39_RS06795 - virulence RhuM family protein, at 1,885,371 to 1,886,456 _RS06795 ABI39_RS06800: ABI39_RS06800 - DEAD/DEAH box helicase family protein, at 1,886,453 to 1,888,798 _RS06800 ABI39_RS06805: ABI39_RS06805 - hypothetical protein, at 1,888,804 to 1,889,022 _RS06805 ABI39_RS06810: ABI39_RS06810 - AAA family ATPase, at 1,889,031 to 1,891,031 _RS06810
Group Condition ABI39_RS06790 ABI39_RS06795 ABI39_RS06800 ABI39_RS06805 ABI39_RS06810
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.2 -0.5 -0.2 -0.9 -0.1
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -1.0 -0.2 -0.5 -0.4
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.5 -0.5 -0.4 -0.4 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.5 -0.2 -1.0 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.0 -1.4 -0.1
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) -0.2 -0.2 -0.2 -0.8 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.2 -0.5 -0.0 -0.8 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.4 -0.7 -0.4 -0.1 -0.0
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.0 -0.2 -0.2 -1.0 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.9 -0.2 -0.5 +0.0
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.1 -1.2 -0.1
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.9 +0.1 -0.8 +0.0
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) -0.2 -0.2 -0.2 -0.7 -0.0
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.1 -0.6 +0.0 -0.6 +0.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.1 -0.2 -0.0 -0.7 -0.1
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.1 -0.3 +0.0 -0.9 +0.0
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.3 -0.3 -0.1 -0.9 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.1 -0.3 -0.5 -0.2
carbon source B-glucan from yeast (C) -0.3 -0.0 -0.1 -0.8 +0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.0 -0.4 +0.1 -0.6 -0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) -0.1 -0.4 +0.1 -0.6 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 -0.4 -0.1 -0.5 +0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.2 +0.2 -0.5 -0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.1 -0.9 +0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.3 -0.2 +0.2 -0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 +0.3 +0.1 +0.4 +0.2
carbon source D-Galactose 2.5 mg/ml (C) +0.3 +0.3 +0.2 +0.4 +0.2
carbon source D-Fructose 2.5 mg/ml (C) +0.4 +0.3 +0.2 +0.4 +0.3
carbon source D-Glucose 2.5 mg/ml (C) +0.4 +0.4 +0.2 +0.3 +0.3
carbon source D-Glucose 2.5 mg/ml (C) +0.4 +0.2 +0.2 +0.5 +0.3
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