Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS06700 and ABI39_RS06705 are separated by 350 nucleotidesABI39_RS06705 and ABI39_RS06710 are separated by 436 nucleotidesABI39_RS06710 and ABI39_RS06715 are separated by 268 nucleotidesABI39_RS06715 and ABI39_RS06720 are separated by 92 nucleotides ABI39_RS06700: ABI39_RS06700 - response regulator, at 1,862,218 to 1,866,339 _RS06700 ABI39_RS06705: ABI39_RS06705 - DUF5033 domain-containing protein, at 1,866,690 to 1,867,295 _RS06705 ABI39_RS06710: ABI39_RS06710 - DUF3575 domain-containing protein, at 1,867,732 to 1,868,235 _RS06710 ABI39_RS06715: ABI39_RS06715 - helix-turn-helix domain-containing protein, at 1,868,504 to 1,869,415 _RS06715 ABI39_RS06720: ABI39_RS06720 - site-specific integrase, at 1,869,508 to 1,870,614 _RS06720
Group Condition ABI39_RS06700 ABI39_RS06705 ABI39_RS06710 ABI39_RS06715 ABI39_RS06720
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.1 -0.7 -0.9 -0.3 -0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.2 -0.4 -1.5 +0.4
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 -0.4 +0.0 -0.4 -0.5
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.6 -0.3 -0.3
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -0.1 -0.5 -0.0 -0.5 -0.1
carbon source D-Glucosamine Hydrochloride 2.5 mg/ml (C) -0.1 -0.2 -0.3 -0.4 -0.1
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.0 -0.6 -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.0 -0.4 -0.2 -0.7 +0.2
carbon source D-Xylose 2.5 mg/ml (C) -0.0 -0.2 -0.1 -0.7 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.0 -0.3 -0.3 -0.4 +0.2
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) -0.0 -0.5 -0.2 -0.4 +0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.0 -0.3 -0.2 -0.5 +0.2
carbon source NAG 2.5 mg/ml (C) -0.1 -0.3 +0.3 -0.6 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.1 -0.3 -0.5 +0.3 -0.0
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.0 +0.1 -0.4 -0.5 +0.1
carbon source Galactan from Potato (C) +0.1 -0.3 -0.7 -0.1 +0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.5 -0.4 +0.3
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.1 +0.3 -0.3 -0.8 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 -0.2 -0.5 -0.3 +0.5
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.1 -0.5 -0.2 +0.4 -0.1
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.2 +0.0 -0.4 -0.3 +0.2
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.0 +0.5 -0.4 +0.0 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.3 -0.6 +0.3 +0.5
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.0 -0.1 -0.5 +0.3 +0.5
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.0 +0.4 +0.1 -0.7 +0.6
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.1 -0.5 +0.8 +0.5
carbon source D-Fructose 2.5 mg/ml (C) +0.2 -0.0 +0.3 -0.1 +0.5
carbon source amylopectin from maize (C) +0.0 +0.4 +0.1 +0.0 +0.6
carbon source Amylopectin from Potato (C) +0.1 +0.4 +0.3 +0.2 +0.2
carbon source Galactan from Potato (C) +0.1 +0.0 -0.7 +0.7 +1.1
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