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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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500 nt
ABI39_RS06700 and ABI39_RS06705 are separated by 350 nucleotides
ABI39_RS06705 and ABI39_RS06710 are separated by 436 nucleotides
ABI39_RS06710 and ABI39_RS06715 are separated by 268 nucleotides
ABI39_RS06715 and ABI39_RS06720 are separated by 92 nucleotides
ABI39_RS06700: ABI39_RS06700 - response regulator, at 1,862,218 to 1,866,339
_RS06700
ABI39_RS06705: ABI39_RS06705 - DUF5033 domain-containing protein, at 1,866,690 to 1,867,295
_RS06705
ABI39_RS06710: ABI39_RS06710 - DUF3575 domain-containing protein, at 1,867,732 to 1,868,235
_RS06710
ABI39_RS06715: ABI39_RS06715 - helix-turn-helix domain-containing protein, at 1,868,504 to 1,869,415
_RS06715
ABI39_RS06720: ABI39_RS06720 - site-specific integrase, at 1,869,508 to 1,870,614
_RS06720
Group
Condition
ABI39
_RS06700
ABI39
_RS06705
ABI39
_RS06710
ABI39
_RS06715
ABI39
_RS06720
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.1
-0.7
-0.9
-0.3
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.1
+0.2
-0.4
-1.5
+0.4
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.0
-0.4
+0.0
-0.4
-0.5
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
-0.6
-0.3
-0.3
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-0.1
-0.5
-0.0
-0.5
-0.1
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
-0.1
-0.2
-0.3
-0.4
-0.1
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.0
-0.6
-0.5
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.0
-0.4
-0.2
-0.7
+0.2
carbon source
D-Xylose 2.5 mg/ml (C)
-0.0
-0.2
-0.1
-0.7
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.0
-0.3
-0.3
-0.4
+0.2
carbon source
(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
-0.0
-0.5
-0.2
-0.4
+0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.0
-0.3
-0.2
-0.5
+0.2
carbon source
NAG 2.5 mg/ml (C)
-0.1
-0.3
+0.3
-0.6
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.1
-0.3
-0.5
+0.3
-0.0
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.0
+0.1
-0.4
-0.5
+0.1
carbon source
Galactan from Potato (C)
+0.1
-0.3
-0.7
-0.1
+0.4
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-0.2
-0.5
-0.4
+0.3
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.1
+0.3
-0.3
-0.8
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
-0.0
-0.2
-0.5
-0.3
+0.5
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.1
-0.5
-0.2
+0.4
-0.1
carbon source
Glycogen; filtered 2.5 mg/ml (C)
+0.2
+0.0
-0.4
-0.3
+0.2
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.0
+0.5
-0.4
+0.0
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
-0.3
-0.6
+0.3
+0.5
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.0
-0.1
-0.5
+0.3
+0.5
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.0
+0.4
+0.1
-0.7
+0.6
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.2
-0.1
-0.5
+0.8
+0.5
carbon source
D-Fructose 2.5 mg/ml (C)
+0.2
-0.0
+0.3
-0.1
+0.5
carbon source
amylopectin from maize (C)
+0.0
+0.4
+0.1
+0.0
+0.6
carbon source
Amylopectin from Potato (C)
+0.1
+0.4
+0.3
+0.2
+0.2
carbon source
Galactan from Potato (C)
+0.1
+0.0
-0.7
+0.7
+1.1
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