Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS06625 and ABI39_RS06630 overlap by 20 nucleotidesABI39_RS06630 and ABI39_RS06635 are separated by 3 nucleotidesABI39_RS06635 and ABI39_RS06640 are separated by 26 nucleotidesABI39_RS06640 and ABI39_RS06645 are separated by 178 nucleotides ABI39_RS06625: ABI39_RS06625 - rhomboid family intramembrane serine protease, at 1,841,731 to 1,842,408 _RS06625 ABI39_RS06630: ABI39_RS06630 - rhomboid family intramembrane serine protease, at 1,842,389 to 1,843,282 _RS06630 ABI39_RS06635: ABI39_RS06635 - endonuclease/exonuclease/phosphatase family protein, at 1,843,286 to 1,844,365 _RS06635 ABI39_RS06640: ABI39_RS06640 - M3 family metallopeptidase, at 1,844,392 to 1,846,479 _RS06640 ABI39_RS06645: ABI39_RS06645 - protein translocase subunit SecDF, at 1,846,658 to 1,849,645 _RS06645
Group Condition ABI39_RS06625 ABI39_RS06630 ABI39_RS06635 ABI39_RS06640 ABI39_RS06645
carbon source amylopectin from maize (C) -2.8 -1.1 -1.0 +0.2 N.D.
carbon source Amylopectin from Potato (C) -2.2 -0.8 -0.3 -0.0 N.D.
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -1.2 -0.6 -0.5 -0.3 N.D.
carbon source amylopectin from maize (C) -1.3 -0.7 -0.4 -0.1 N.D.
carbon source B-glucan from yeast (C) -1.5 -0.7 +0.0 -0.2 N.D.
carbon source B-glucan from yeast (C) -1.6 -0.6 -0.0 -0.1 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -1.1 -1.1 -0.1 N.D.
carbon source N-acetylneuraminic (C) -1.8 -0.5 +0.2 -0.1 N.D.
carbon source N-acetylneuraminic (C) -1.7 -0.4 +0.3 -0.2 N.D.
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.8 -1.3 -0.2 N.D.
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -1.1 -0.5 -0.1 -0.1 N.D.
carbon source Starch from potato (C) -1.1 -0.5 -0.2 -0.1 N.D.
carbon source beta-Cyclodextrin (C) -0.7 -0.4 -0.4 -0.1 N.D.
carbon source NAG (C) -1.0 -0.5 -0.0 -0.1 N.D.
carbon source Beta-Lactose 2.5 mg/ml (C) -1.0 -0.5 -0.1 +0.0 N.D.
carbon source Starch from potato (C) -1.1 -0.5 +0.1 -0.1 N.D.
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.1 -1.0 -0.3 -0.0 N.D.
carbon source D-Glucose (C) -0.6 -0.3 -0.2 -0.2 N.D.
carbon source Mucin from porcine stomach type III (C) -0.8 -0.5 +0.1 -0.2 N.D.
carbon source a-Cyclodextrin (C) -0.8 -0.4 -0.1 -0.1 N.D.
carbon source Pectic galactan from potato (C) -0.6 -0.6 +0.3 -0.1 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.4 -0.6 -0.6 -0.1 N.D.
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.4 -0.7 -0.5 +0.0 N.D.
carbon source Glycogen; filtered 2.5 mg/ml (C) +0.6 -0.8 -0.5 -0.0 N.D.
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.9 -1.2 -0.2 -0.2 N.D.
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.9 -0.9 -0.5 +0.0 N.D.
carbon source Glycogen; autoclaved 2.5 mg/ml (C) +0.8 -0.8 -0.3 -0.0 N.D.
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.7 +0.4 -0.1 N.D.
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.7 -0.6 -0.3 +0.1 N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.3 -0.4 +0.5 -0.2 N.D.
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