Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS06340 and ABI39_RS06345 are separated by 6 nucleotidesABI39_RS06345 and ABI39_RS06350 are separated by 3 nucleotidesABI39_RS06350 and ABI39_RS06355 are separated by 144 nucleotidesABI39_RS06355 and ABI39_RS06360 are separated by 257 nucleotides ABI39_RS06340: ABI39_RS06340 - alpha-galactosidase, at 1,757,024 to 1,759,099 _RS06340 ABI39_RS06345: ABI39_RS06345 - alpha-L-fucosidase, at 1,759,106 to 1,760,491 _RS06345 ABI39_RS06350: ABI39_RS06350 - sulfatase-like hydrolase/transferase, at 1,760,495 to 1,761,931 _RS06350 ABI39_RS06355: ABI39_RS06355 - hypothetical protein, at 1,762,076 to 1,762,879 _RS06355 ABI39_RS06360: ABI39_RS06360 - RagB/SusD family nutrient uptake outer membrane protein, at 1,763,137 to 1,765,185 _RS06360
Group Condition ABI39_RS06340 ABI39_RS06345 ABI39_RS06350 ABI39_RS06355 ABI39_RS06360
carbon source Galactan from Potato (C) -0.1 -0.3 -0.3 -0.3 -0.1
carbon source amylopectin from maize (C) +0.1 -0.5 -0.2 -0.1 +0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) -0.2 -0.2 -0.2 -0.2 +0.2
carbon source amylopectin from maize (C) +0.2 -0.5 -0.3 +0.2 -0.0
carbon source Galactan from Potato (C) -0.0 -0.4 -0.0 -0.3 +0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.4 -0.2 -0.4 -0.1 -0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 +0.0 -0.3 -0.2 +0.2
carbon source a-Cyclodextrin (C) +0.2 -0.3 -0.1 -0.1 +0.1
carbon source Amylopectin from Potato (C) +0.4 -0.3 -0.1 -0.0 +0.0
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.2 -0.2 -0.2 +0.1 +0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 -0.3 +0.1 +0.3 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.2 -0.2 -0.3 +0.3 +0.1
carbon source D-Glucose 2.5 mg/ml (C) -0.1 +0.0 -0.1 +0.1 +0.3
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.3 -0.1 -0.3 +0.2 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.2 +0.1 +0.2 +0.2
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.3 +0.2 -0.2 +0.0 +0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.0 +0.1 -0.2 +0.1 +0.5
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.2 -0.2 -0.1 +0.3 +0.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.2 +0.1 +0.4 +0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.4 +0.1 -0.1 +0.1 +0.3
carbon source (+)-Arabinogalactan; autoclaved 5 mg/ml (C) +0.2 +0.1 +0.0 +0.2 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.3 -0.1 +0.5 +0.3
carbon source D-Xylose 2.5 mg/ml (C) +0.1 +0.1 +0.0 +0.3 +0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.3 -0.0 +0.0 +0.4 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.4 -0.2 -0.0 +0.3 +0.2
carbon source Beta-Lactose 2.5 mg/ml (C) +0.2 +0.1 +0.2 +0.2 +0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.3 +0.2 +0.3
carbon source Beta-Lactose 2.5 mg/ml (C) +0.2 +0.1 +0.1 +0.2 +0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.2 +0.1 +0.0 +0.2 +0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.2 +0.1 +0.5 -0.0
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ABI39_RS06340
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ABI39_RS06345
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