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Cofit
Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS06165 and ABI39_RS06170 are separated by 36 nucleotides
ABI39_RS06170 and ABI39_RS06175 are separated by 30 nucleotides
ABI39_RS06175 and ABI39_RS06180 are separated by 183 nucleotides
ABI39_RS06180 and ABI39_RS06185 are separated by 245 nucleotides
ABI39_RS06165: ABI39_RS06165 - GtrA family protein, at 1,712,360 to 1,712,733
_RS06165
ABI39_RS06170: ABI39_RS06170 - glycosyltransferase, at 1,712,770 to 1,713,717
_RS06170
ABI39_RS06175: ABI39_RS06175 - alkaline phosphatase family protein, at 1,713,748 to 1,715,775
_RS06175
ABI39_RS06180: ABI39_RS06180 - glycosyltransferase family 2 protein, at 1,715,959 to 1,716,942
_RS06180
ABI39_RS06185: ABI39_RS06185 - glycosyltransferase, at 1,717,188 to 1,718,504
_RS06185
Group
Condition
ABI39
_RS06165
ABI39
_RS06170
ABI39
_RS06175
ABI39
_RS06180
ABI39
_RS06185
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-3.3
-1.6
-0.7
+0.1
+0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
-2.0
-0.6
-0.7
-0.8
-0.3
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
-2.3
+0.1
-0.3
+0.0
+0.0
carbon source
N-acetylneuraminic (C)
+0.2
-0.1
-0.2
-1.2
-0.8
carbon source
N-acetylneuraminic (C)
+0.5
+0.0
-0.2
-1.4
-0.7
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.7
-0.3
-0.6
-0.5
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+1.7
-0.5
-0.5
-1.0
-0.4
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-1.5
+0.4
+0.3
-0.0
+0.4
carbon source
Beta-Lactose 2.5 mg/ml (C)
-2.5
+0.4
+0.5
+0.6
+0.6
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.8
-0.4
-0.1
+0.6
+0.6
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-1.2
-0.1
-0.1
+0.5
+0.9
carbon source
D-Glucose 5 mg/ml (C)
+1.4
-0.3
-0.2
-0.4
-0.3
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
+1.6
-0.4
-0.4
-0.4
-0.2
carbon source
Amylopectin from Potato (C)
-1.7
-0.3
+0.2
+0.9
+1.3
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.9
+0.7
+0.5
+0.1
+0.0
carbon source
Glycogen; autoclaved 2.5 mg/ml (C)
+1.5
-0.4
-0.1
-0.3
+0.1
carbon source
Amylopectin from Potato (C)
-1.3
-0.2
+0.2
+1.0
+1.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+1.3
-0.5
-0.3
+0.3
+0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+2.1
-0.3
-0.6
-0.0
+0.2
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+1.7
-0.3
-0.1
-0.1
+0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+1.9
+0.0
-0.1
-0.3
+0.3
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.4
-0.4
+0.4
+1.0
+0.7
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+0.7
+1.0
+0.6
-0.3
+0.2
carbon source
polygalacturonic (ultrapure) (C)
+0.4
+0.2
+0.3
+0.8
+0.6
carbon source
polygalacturonic (ultrapure) (C)
+0.7
+0.3
+0.3
+0.9
+0.5
carbon source
amylopectin from maize (C)
+0.6
-0.1
+0.1
+1.1
+0.8
carbon source
amylopectin from maize (C)
+1.5
-0.2
-0.2
+0.5
+1.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.6
-0.2
+0.6
+0.9
+0.9
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.1
+0.8
+0.5
+0.9
+0.9
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
+1.0
+0.7
+0.3
+0.7
+0.8
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