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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS06115 and ABI39_RS06120 are separated by 176 nucleotides
ABI39_RS06120 and ABI39_RS06125 are separated by 95 nucleotides
ABI39_RS06125 and ABI39_RS06130 are separated by 150 nucleotides
ABI39_RS06130 and ABI39_RS06135 are separated by 150 nucleotides
ABI39_RS06115: ABI39_RS06115 - phosphatase PAP2 family protein, at 1,696,176 to 1,697,153
_RS06115
ABI39_RS06120: ABI39_RS06120 - DUF2807 domain-containing protein, at 1,697,330 to 1,698,181
_RS06120
ABI39_RS06125: ABI39_RS06125 - tRNA dihydrouridine synthase DusB, at 1,698,277 to 1,699,266
_RS06125
ABI39_RS06130: ABI39_RS06130 - U32 family peptidase, at 1,699,417 to 1,700,679
_RS06130
ABI39_RS06135: ABI39_RS06135 - RagB/SusD family nutrient uptake outer membrane protein, at 1,700,830 to 1,702,380
_RS06135
Group
Condition
ABI39
_RS06115
ABI39
_RS06120
ABI39
_RS06125
ABI39
_RS06130
ABI39
_RS06135
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-4.9
+0.1
+0.1
-0.9
-0.1
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-4.0
+0.1
-0.0
-1.0
-0.0
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-4.1
-0.1
+0.7
-0.6
-0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-4.3
-0.0
+0.8
-0.7
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.5
-0.6
-0.0
-0.9
-0.3
carbon source
Amylopectin from Potato (C)
-3.2
+0.1
-0.4
-0.8
+0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-2.1
-0.5
-0.2
-1.1
-0.2
carbon source
Amylopectin from Potato (C)
-2.4
-0.3
-0.4
-0.6
-0.0
carbon source
polygalacturonic (ultrapure) (C)
-2.7
-0.0
+0.1
-0.8
-0.1
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-2.2
+0.1
-0.3
-0.6
-0.3
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-3.7
-0.0
+0.3
+0.4
-0.2
carbon source
D-Mannose (C)
-1.5
-0.1
+0.0
-1.5
-0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-2.2
+0.0
-0.1
-0.9
-0.1
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
-2.7
-0.1
+0.2
-0.5
+0.0
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
-3.5
+0.1
+0.3
+0.1
-0.0
carbon source
D-Maltose (C)
-2.6
-0.2
+0.2
-0.4
-0.0
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-3.0
+0.1
+0.2
-0.1
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-3.2
-0.2
+0.6
+0.1
+0.1
carbon source
Red Arabinan from sugar-beet; filtered 5 mg/ml (C)
-3.0
-0.0
+0.4
+0.1
-0.0
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-3.0
-0.0
+0.5
+0.0
-0.0
carbon source
D-Glucose 5 mg/ml (C)
-3.1
+0.2
+0.6
+0.0
-0.1
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.7
-0.0
+0.4
+0.1
-0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-2.7
+0.1
+0.5
+0.2
-0.2
carbon source
Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
-2.7
+0.1
+0.5
+0.1
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-2.7
+0.2
+0.7
-0.1
+0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-2.2
-0.2
+0.9
+0.3
+0.1
carbon source
NAG 2.5 mg/ml (C)
-2.0
+0.5
+0.6
-0.1
-0.0
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+1.9
-0.2
-0.4
-1.2
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+3.2
+0.2
-0.7
-1.9
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
+3.1
-0.0
-0.6
-1.5
+0.1
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