Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS06115 and ABI39_RS06120 are separated by 176 nucleotidesABI39_RS06120 and ABI39_RS06125 are separated by 95 nucleotidesABI39_RS06125 and ABI39_RS06130 are separated by 150 nucleotidesABI39_RS06130 and ABI39_RS06135 are separated by 150 nucleotides ABI39_RS06115: ABI39_RS06115 - phosphatase PAP2 family protein, at 1,696,176 to 1,697,153 _RS06115 ABI39_RS06120: ABI39_RS06120 - DUF2807 domain-containing protein, at 1,697,330 to 1,698,181 _RS06120 ABI39_RS06125: ABI39_RS06125 - tRNA dihydrouridine synthase DusB, at 1,698,277 to 1,699,266 _RS06125 ABI39_RS06130: ABI39_RS06130 - U32 family peptidase, at 1,699,417 to 1,700,679 _RS06130 ABI39_RS06135: ABI39_RS06135 - RagB/SusD family nutrient uptake outer membrane protein, at 1,700,830 to 1,702,380 _RS06135
Group Condition ABI39_RS06115 ABI39_RS06120 ABI39_RS06125 ABI39_RS06130 ABI39_RS06135
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -4.9 +0.1 +0.1 -0.9 -0.1
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -4.0 +0.1 -0.0 -1.0 -0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -4.1 -0.1 +0.7 -0.6 -0.2
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -4.3 -0.0 +0.8 -0.7 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.5 -0.6 -0.0 -0.9 -0.3
carbon source Amylopectin from Potato (C) -3.2 +0.1 -0.4 -0.8 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -2.1 -0.5 -0.2 -1.1 -0.2
carbon source Amylopectin from Potato (C) -2.4 -0.3 -0.4 -0.6 -0.0
carbon source polygalacturonic (ultrapure) (C) -2.7 -0.0 +0.1 -0.8 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -2.2 +0.1 -0.3 -0.6 -0.3
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -3.7 -0.0 +0.3 +0.4 -0.2
carbon source D-Mannose (C) -1.5 -0.1 +0.0 -1.5 -0.1
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -2.2 +0.0 -0.1 -0.9 -0.1
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -2.7 -0.1 +0.2 -0.5 +0.0
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -3.5 +0.1 +0.3 +0.1 -0.0
carbon source D-Maltose (C) -2.6 -0.2 +0.2 -0.4 -0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -3.0 +0.1 +0.2 -0.1 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -3.2 -0.2 +0.6 +0.1 +0.1
carbon source Red Arabinan from sugar-beet; filtered 5 mg/ml (C) -3.0 -0.0 +0.4 +0.1 -0.0
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -3.0 -0.0 +0.5 +0.0 -0.0
carbon source D-Glucose 5 mg/ml (C) -3.1 +0.2 +0.6 +0.0 -0.1
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -2.7 -0.0 +0.4 +0.1 -0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -2.7 +0.1 +0.5 +0.2 -0.2
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) -2.7 +0.1 +0.5 +0.1 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -2.7 +0.2 +0.7 -0.1 +0.0
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -2.2 -0.2 +0.9 +0.3 +0.1
carbon source NAG 2.5 mg/ml (C) -2.0 +0.5 +0.6 -0.1 -0.0
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +1.9 -0.2 -0.4 -1.2 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +3.2 +0.2 -0.7 -1.9 +0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +3.1 -0.0 -0.6 -1.5 +0.1
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