Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS05920 and ABI39_RS05925 are separated by 126 nucleotidesABI39_RS05925 and ABI39_RS05930 are separated by 11 nucleotidesABI39_RS05930 and ABI39_RS05935 are separated by 240 nucleotidesABI39_RS05935 and ABI39_RS05940 are separated by 16 nucleotides ABI39_RS05920: ABI39_RS05920 - family 43 glycosylhydrolase, at 1,641,156 to 1,643,564 _RS05920 ABI39_RS05925: ABI39_RS05925 - glycoside hydrolase family 127 protein, at 1,643,691 to 1,646,096 _RS05925 ABI39_RS05930: ABI39_RS05930 - S9 family peptidase, at 1,646,108 to 1,648,351 _RS05930 ABI39_RS05935: ABI39_RS05935 - pectate lyase, at 1,648,592 to 1,650,733 _RS05935 ABI39_RS05940: ABI39_RS05940 - DUF1593 domain-containing protein, at 1,650,750 to 1,652,120 _RS05940
Group Condition ABI39_RS05920 ABI39_RS05925 ABI39_RS05930 ABI39_RS05935 ABI39_RS05940
carbon source D-Glucose 2.5 mg/ml (C) -0.2 -0.3 -0.3 -0.2 +0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.6 -0.3 +0.0 -0.2 +0.1
carbon source D-Glucose 2.5 mg/ml (C) -0.1 -0.3 -0.4 -0.1 +0.1
carbon source D-Fructose 2.5 mg/ml (C) -0.1 -0.3 -0.3 -0.0 -0.1
carbon source Galactan from Potato (C) -0.6 +0.1 -0.0 +0.1 -0.4
carbon source Amylopectin from Potato (C) -0.7 +0.0 -0.1 +0.2 -0.1
carbon source D-Mannose 2.5 mg/ml (C) -0.2 -0.3 -0.2 -0.1 +0.1
carbon source amylopectin from maize (C) -0.6 -0.1 -0.1 +0.0 +0.1
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.6 +0.0 -0.1 -0.1 +0.2
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.4 -0.1 -0.2 +0.0 +0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.5 -0.3 -0.1 +0.1 +0.4
carbon source amylopectin from maize (C) -0.6 +0.1 +0.0 +0.0 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.3 +0.2 -0.0 -0.2 +0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.3 +0.1 -0.1 -0.2 +0.2
carbon source Amylopectin from Potato (C) -0.5 +0.1 +0.0 +0.1 +0.1
carbon source Galactan from Potato (C) -0.5 +0.2 +0.1 +0.1 -0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.4 -0.3 -0.0 +0.0 +0.4
carbon source Glycogen; autoclaved 2.5 mg/ml (C) -0.3 -0.1 -0.1 +0.1 +0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.3 -0.1 -0.1 -0.1 +0.5
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 -0.2 -0.1 -0.2 +0.1
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.3 +0.1 +0.1 -0.1 +0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) -0.4 +0.1 +0.1 -0.0 +0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.1 +0.4 +0.1 +0.1 -0.2
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.3 +0.1 +0.1 +0.1 +0.4
carbon source D-Glucose (C) +0.3 +0.4 -0.0 -0.1 -0.0
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 +0.3 -0.1 -0.2 -0.1
carbon source D-Mannose (C) +0.3 +0.4 +0.1 -0.0 -0.1
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.4 -0.0 -0.2 +0.4 +0.1
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.3 +0.1 -0.0 +0.0 +0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.7 +0.4 -0.2 -0.1 +0.0
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