Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS05715 and ABI39_RS05720 are separated by 33 nucleotidesABI39_RS05720 and ABI39_RS05725 are separated by 142 nucleotidesABI39_RS05725 and ABI39_RS05735 are separated by 395 nucleotidesABI39_RS05735 and ABI39_RS05740 are separated by 82 nucleotides ABI39_RS05715: ABI39_RS05715 - TonB-dependent receptor, at 1,579,652 to 1,582,705 _RS05715 ABI39_RS05720: ABI39_RS05720 - DUF4982 domain-containing protein, at 1,582,739 to 1,585,177 _RS05720 ABI39_RS05725: ABI39_RS05725 - response regulator, at 1,585,320 to 1,589,303 _RS05725 ABI39_RS05735: ABI39_RS05735 - leucine--tRNA ligase, at 1,589,699 to 1,592,533 _RS05735 ABI39_RS05740: ABI39_RS05740 - YitT family protein, at 1,592,616 to 1,593,512 _RS05740
Group Condition ABI39_RS05715 ABI39_RS05720 ABI39_RS05725 ABI39_RS05735 ABI39_RS05740
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 -0.3 -0.1 N.D. -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.1 -0.4 -0.1 N.D. -0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 -0.1 -0.1 N.D. -0.6
carbon source Beta-Lactose (C) -0.1 -0.1 -0.1 N.D. -0.3
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) -0.1 +0.1 -0.1 N.D. -0.4
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.0 -0.0 -0.0 N.D. -0.4
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) +0.1 -0.1 +0.0 N.D. -0.5
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.0 -0.0 -0.1 N.D. -0.3
nitrogen source L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.1 +0.0 N.D. -0.5
nitrogen source L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.0 +0.2 +0.1 N.D. -0.7
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.1 -0.1 -0.2 N.D. -0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 -0.3 -0.1 N.D. -0.2
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.2 -0.1 -0.0 N.D. -0.3
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.2 -0.1 -0.2 N.D. -0.1
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.2 -0.0 -0.1 N.D. -0.3
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 -0.0 +0.1 N.D. -0.4
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.1 -0.2 N.D. +0.2
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.2 -0.1 N.D. +0.4
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.2 +0.1 N.D. +0.4
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.1 -0.2 -0.0 N.D. +0.3
carbon source D-Glucose (C) -0.0 +0.1 -0.1 N.D. +0.3
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) -0.1 +0.1 -0.1 N.D. +0.4
carbon source D-Fructose 2.5 mg/ml (C) +0.0 +0.2 +0.1 N.D. +0.1
carbon source D-Mannose 2.5 mg/ml (C) +0.2 +0.0 +0.0 N.D. +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.2 +0.1 +0.0 N.D. +0.3
carbon source D-Fructose 2.5 mg/ml (C) +0.0 +0.2 +0.1 N.D. +0.3
carbon source D-Glucose 2.5 mg/ml (C) +0.1 +0.2 +0.1 N.D. +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.2 +0.1 -0.0 N.D. +0.5
carbon source D-Glucose 2.5 mg/ml (C) +0.3 +0.1 +0.2 N.D. +0.2
carbon source amylopectin from maize (C) +0.0 +0.2 +0.0 N.D. +0.6
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ABI39_RS05715
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ABI39_RS05720
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