Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS05415 and ABI39_RS05420 are separated by 156 nucleotidesABI39_RS05420 and ABI39_RS05425 overlap by 1 nucleotidesABI39_RS05425 and ABI39_RS05430 are separated by 6 nucleotidesABI39_RS05430 and ABI39_RS05435 are separated by 180 nucleotides ABI39_RS05415: ABI39_RS05415 - excinuclease ABC subunit UvrC, at 1,505,400 to 1,507,220 _RS05415 ABI39_RS05420: ABI39_RS05420 - D-tyrosyl-tRNA(Tyr) deacylase, at 1,507,377 to 1,507,829 _RS05420 ABI39_RS05425: ABI39_RS05425 - nucleotide pyrophosphohydrolase, at 1,507,829 to 1,508,149 _RS05425 ABI39_RS05430: ABI39_RS05430 - deoxyribose-phosphate aldolase, at 1,508,156 to 1,509,103 _RS05430 ABI39_RS05435: ABI39_RS05435 - polyprenyl synthetase family protein, at 1,509,284 to 1,510,258 _RS05435
Group Condition ABI39_RS05415 ABI39_RS05420 ABI39_RS05425 ABI39_RS05430 ABI39_RS05435
carbon source Mucin from porcine stomach type III (C) -0.1 -0.0 -0.2 -1.1 N.D.
carbon source Mucin from porcine stomach type III (C) +0.2 -0.3 -0.4 -0.8 N.D.
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +0.2 +0.2 -1.4 N.D.
carbon source Locust bean gum; autoclaved 2.5 mg/ml (C) +0.2 -0.5 -0.3 -0.3 N.D.
carbon source Mucin from porcine stomach,Type II (C) +0.0 +0.1 -0.3 -0.7 N.D.
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.0 +0.4 -0.8 -0.2 N.D.
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.2 +0.2 -0.4 -0.4 N.D.
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.3 +0.4 -0.0 -0.7 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 +0.5 -0.4 -0.2 N.D.
carbon source D-Glucose 5 mg/ml (C) +0.2 +0.6 -0.1 -0.7 N.D.
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.3 +0.6 -0.2 -0.5 N.D.
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.2 +0.5 -0.3 -0.3 N.D.
carbon source Galactan from Potato (C) +0.3 +0.4 -0.2 -0.3 N.D.
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.3 +0.5 -0.1 -0.5 N.D.
carbon source Galactan from Potato (C) +0.2 +0.7 -0.3 -0.4 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.2 +0.5 +0.0 -0.6 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.3 +0.5 -0.2 -0.4 N.D.
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.3 +0.6 -0.3 -0.4 N.D.
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.3 +0.4 +0.1 -0.5 N.D.
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.4 +0.6 +0.0 -0.7 N.D.
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.4 +0.3 +0.1 -0.5 N.D.
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.2 +0.7 -0.3 -0.3 N.D.
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) +0.3 +0.5 -0.2 -0.3 N.D.
carbon source Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C) +0.4 +0.6 -0.3 -0.3 N.D.
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.2 +0.8 -0.1 -0.4 N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.0 +0.8 +0.1 -0.4 N.D.
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.3 +0.4 +0.3 -0.5 N.D.
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.0 +0.9 -0.0 -0.3 N.D.
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.2 +0.8 +0.1 -0.4 N.D.
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.4 +0.7 -0.1 -0.2 N.D.
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