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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS05230 and ABI39_RS05235 overlap by 34 nucleotides
ABI39_RS05235 and ABI39_RS05240 are separated by 48 nucleotides
ABI39_RS05240 and ABI39_RS05245 are separated by 163 nucleotides
ABI39_RS05245 and ABI39_RS05250 are separated by 39 nucleotides
ABI39_RS05230: ABI39_RS05230 - DUF3575 domain-containing protein, at 1,459,456 to 1,460,823
_RS05230
ABI39_RS05235: ABI39_RS05235 - DUF5119 domain-containing protein, at 1,460,790 to 1,461,791
_RS05235
ABI39_RS05240: ABI39_RS05240 - fimbrillin family protein, at 1,461,840 to 1,462,829
_RS05240
ABI39_RS05245: ABI39_RS05245 - AAA family ATPase, at 1,462,993 to 1,463,478
_RS05245
ABI39_RS05250: ABI39_RS05250 - AAA family ATPase, at 1,463,518 to 1,463,709
_RS05250
Group
Condition
ABI39
_RS05230
ABI39
_RS05235
ABI39
_RS05240
ABI39
_RS05245
ABI39
_RS05250
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.4
-0.0
+0.0
-0.4
carbon source
polygalacturonic (ultrapure) (C)
-0.2
-0.1
-0.1
-0.3
+0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.2
-0.2
+0.1
-0.3
-0.2
carbon source
(+)-Arabinogalactan; autoclaved 5 mg/ml (C)
+0.2
+0.0
-0.1
-0.2
-0.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.0
-0.1
+0.7
-0.8
carbon source
NAG 2.5 mg/ml (C)
+0.3
-0.0
+0.1
-0.2
-0.4
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.0
-0.1
-0.1
+0.4
-0.4
carbon source
Fructose-6-phosphate (C)
-0.3
-0.1
-0.1
+0.2
+0.2
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.2
+0.1
-0.1
-0.4
+0.2
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.1
-0.2
-0.2
-0.1
+0.6
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.1
+0.4
-0.2
+0.2
-0.4
carbon source
Locust bean gum; autoclaved 2.5 mg/ml (C)
+0.1
+0.2
+0.1
-0.3
+0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.1
+0.4
-0.0
+0.1
-0.2
carbon source
B-glucan from yeast (C)
+0.3
-0.1
-0.2
+0.1
+0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.2
+0.4
-0.2
+0.1
-0.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
-0.1
+0.3
+0.1
-0.2
+0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.4
+0.5
-0.3
+0.5
+0.2
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.1
+0.4
-0.1
+0.3
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.2
+0.3
-0.2
+0.1
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; filtered 2.5 mg/ml (C)
+0.2
+0.5
-0.1
+0.2
-0.2
carbon source
amylopectin from maize (C)
-0.0
+0.1
+0.2
+0.5
-0.2
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
+0.2
+0.4
-0.2
+0.1
+0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.1
+0.4
+0.0
+0.4
-0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.1
+0.5
-0.2
+0.5
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.1
+0.4
+0.0
+0.2
+0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.3
+0.9
-0.1
-0.1
-0.0
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.0
+0.3
+0.0
+0.0
+0.7
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.4
+0.3
-0.0
+0.5
+0.1
carbon source
Galactan from Potato (C)
+0.1
+0.6
-0.1
-0.0
+0.8
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.1
+0.6
-0.1
+0.3
+0.6
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