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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS04845 and ABI39_RS04850 are separated by 12 nucleotides
ABI39_RS04850 and ABI39_RS04855 are separated by 144 nucleotides
ABI39_RS04855 and ABI39_RS04860 are separated by 622 nucleotides
ABI39_RS04860 and ABI39_RS04865 overlap by 11 nucleotides
ABI39_RS04845: ABI39_RS04845 - outer membrane beta-barrel protein, at 1,351,994 to 1,352,641
_RS04845
ABI39_RS04850: ABI39_RS04850 - hypothetical protein, at 1,352,654 to 1,353,151
_RS04850
ABI39_RS04855: ABI39_RS04855 - glycoside hydrolase family 88 protein, at 1,353,296 to 1,354,594
_RS04855
ABI39_RS04860: ABI39_RS04860 - HigA family addiction module antidote protein, at 1,355,217 to 1,356,332
_RS04860
ABI39_RS04865: ABI39_RS04865 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,356,322 to 1,356,645
_RS04865
Group
Condition
ABI39
_RS04845
ABI39
_RS04850
ABI39
_RS04855
ABI39
_RS04860
ABI39
_RS04865
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.4
-0.1
+0.0
-6.9
-0.9
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
-0.2
+0.0
-6.8
-0.5
carbon source
D-Glucose (C)
+0.3
+0.1
+0.0
-7.7
+0.2
carbon source
Amylopectin from Potato (C)
+0.2
+0.1
+0.2
-5.5
-1.9
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
+0.0
-0.0
-0.0
-5.5
-1.0
carbon source
Amylopectin from Potato (C)
+0.1
+0.1
+0.0
-5.4
-1.4
nitrogen source
L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.5
-0.3
-0.2
-6.0
+0.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
-0.4
-0.1
-4.7
-0.7
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.4
-0.1
-0.4
-4.1
-0.6
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
-0.1
-0.1
-0.0
-4.9
-0.5
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
-0.3
-0.4
-3.4
-1.2
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.2
+0.3
-0.2
-3.4
-2.3
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
-0.3
+0.1
-0.1
-3.1
-2.0
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.1
-4.5
-0.9
carbon source
D-Mannose (C)
+0.2
+0.0
-0.1
-5.3
-0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
-0.2
-0.1
+0.1
-4.1
-1.0
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
+0.0
+0.1
-4.0
-0.6
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
+0.0
+0.1
-0.1
-3.6
-1.1
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.3
-0.4
-0.2
-4.0
-0.3
nitrogen source
L-Glutamine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.1
-0.2
-0.0
-4.2
+0.1
carbon source
N-acetylneuraminic (C)
-0.2
+0.1
-0.0
-4.8
+0.5
carbon source
N-acetylneuraminic (C)
-0.1
+0.1
-0.0
-4.9
+0.5
carbon source
polygalacturonic (ultrapure) (C)
-0.2
-0.1
-0.0
-4.3
+0.2
carbon source
beta-Cyclodextrin (C)
+0.0
+0.2
-0.0
-4.1
-0.4
carbon source
D-Fructose (C)
-0.0
+0.0
-0.2
-4.4
+0.3
carbon source
D-Raffinose (C)
+0.0
+0.2
-0.1
-4.4
+0.1
carbon source
D-Glucose (C)
+0.2
+0.1
-0.1
-4.4
+0.0
carbon source
Inulin from chicory; autoclaved 2.5 mg/ml (C)
+0.2
-0.0
-0.0
-3.5
-0.8
carbon source
D-Galactose (C)
+0.3
-0.0
-0.1
-4.3
+0.2
carbon source
D-Glucose 2.5 mg/ml (C)
+0.0
+0.1
+0.2
-3.8
+0.4
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