Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS04530 and ABI39_RS04535 are separated by 223 nucleotidesABI39_RS04535 and ABI39_RS04540 are separated by 20 nucleotidesABI39_RS04540 and ABI39_RS04545 are separated by 114 nucleotidesABI39_RS04545 and ABI39_RS04550 overlap by 4 nucleotides ABI39_RS04530: ABI39_RS04530 - tetratricopeptide repeat protein, at 1,275,829 to 1,277,454 _RS04530 ABI39_RS04535: ABI39_RS04535 - TonB-dependent receptor, at 1,277,678 to 1,280,806 _RS04535 ABI39_RS04540: ABI39_RS04540 - RagB/SusD family nutrient uptake outer membrane protein, at 1,280,827 to 1,282,344 _RS04540 ABI39_RS04545: ABI39_RS04545 - LysO family transporter, at 1,282,459 to 1,282,740 _RS04545 ABI39_RS04550: ABI39_RS04550 - lysine exporter LysO family protein, at 1,282,737 to 1,283,339 _RS04550
Group Condition ABI39_RS04530 ABI39_RS04535 ABI39_RS04540 ABI39_RS04545 ABI39_RS04550
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -0.1 -0.1 -0.5 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 -0.0 -0.3 +0.1 -0.6
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 -0.1 -0.3 -0.6 -0.0
carbon source D-Glucose 2.5 mg/ml (C) -0.0 -0.0 -0.1 -0.3 -0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.1 +0.1 +0.1 -0.2 -0.8
carbon source D-Mannose 2.5 mg/ml (C) -0.1 +0.0 -0.0 -0.4 -0.4
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.2 +0.2 +0.3 -1.0 -0.1
carbon source Galactan from Potato; filtered 2.5 mg/ml (C) +0.1 +0.1 -0.1 -0.5 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.2 -0.1 -0.1 -0.3 -0.4
carbon source Mucin from porcine stomach type III (C) +0.0 +0.1 +0.2 -0.8 -0.2
carbon source Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.1 -0.2 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) +0.1 -0.1 -0.3 -0.6 +0.4
carbon source Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) +0.1 -0.0 +0.0 +0.2 -0.5
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen +0.1 +0.1 +0.2 -0.3 -0.4
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.1 +0.1 +0.1 -0.6
carbon source amylopectin from maize (C) -0.1 +0.1 +0.1 +0.3 -0.5
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) +0.1 +0.2 +0.2 -0.5 +0.0
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.2 -0.1 +0.2 +0.3 -0.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.0 -0.1 +0.1 +0.4 -0.3
carbon source Pectin from apple; filtered 1 mg/ml (C) +0.1 +0.1 +0.2 +0.2 -0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.2 +0.1 +0.2 +0.2 -0.2
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) -0.1 -0.1 +0.2 +0.6 -0.2
carbon source beta-Cyclodextrin 2.5 mg/ml (C) -0.0 -0.1 +0.2 +0.5 +0.1
carbon source amylopectin from maize (C) +0.1 +0.2 +0.0 +0.6 -0.0
carbon source Starch from potato (C) +0.1 +0.1 +0.1 +0.5 +0.2
carbon source N-acetylneuraminic (C) -0.1 -0.1 +0.1 +0.7 +0.4
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) +0.2 -0.0 +0.2 +0.2 +0.5
carbon source B-glucan from yeast (C) +0.2 +0.1 +0.2 +0.4 +0.2
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.2 +0.0 -0.0 +0.8 +0.5
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 +0.0 +0.3 +0.6 +0.3
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