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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS04030 and ABI39_RS04035 are separated by 15 nucleotides
ABI39_RS04035 and ABI39_RS04040 are separated by 97 nucleotides
ABI39_RS04040 and ABI39_RS04045 are separated by 22 nucleotides
ABI39_RS04045 and ABI39_RS04050 are separated by 152 nucleotides
ABI39_RS04030: ABI39_RS04030 - beta-galactosidase, at 1,132,819 to 1,135,659
_RS04030
ABI39_RS04035: ABI39_RS04035 - glycosyl hydrolase 115 family protein, at 1,135,675 to 1,138,257
_RS04035
ABI39_RS04040: ABI39_RS04040 - RagB/SusD family nutrient uptake outer membrane protein, at 1,138,355 to 1,140,052
_RS04040
ABI39_RS04045: ABI39_RS04045 - TonB-dependent receptor, at 1,140,075 to 1,143,401
_RS04045
ABI39_RS04050: ABI39_RS04050 - helix-turn-helix domain-containing protein, at 1,143,554 to 1,146,433
_RS04050
Group
Condition
ABI39
_RS04030
ABI39
_RS04035
ABI39
_RS04040
ABI39
_RS04045
ABI39
_RS04050
nitrogen source
L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.2
-0.1
-0.1
-0.1
-0.2
carbon source
D-Fructose 2.5 mg/ml (C)
-0.2
-0.1
-0.1
-0.0
-0.2
carbon source
D-Mannose 2.5 mg/ml (C)
-0.2
-0.0
-0.0
-0.0
-0.3
carbon source
B-glucan from yeast (C)
+0.0
+0.0
-0.3
-0.1
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.1
-0.1
-0.4
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.2
-0.0
-0.2
-0.2
-0.2
carbon source
D-Fructose 2.5 mg/ml (C)
-0.2
-0.0
+0.1
-0.1
-0.2
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.0
+0.1
-0.0
-0.3
-0.2
carbon source
N-acetylneuraminic (C)
-0.1
+0.1
-0.0
-0.1
-0.2
carbon source
(+)-Arabinogalactan (C)
-0.2
+0.0
-0.1
+0.1
-0.2
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.2
-0.1
-0.2
-0.2
-0.0
carbon source
Amylopectin from Potato (C)
-0.2
-0.1
+0.2
-0.0
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
-0.1
+0.0
-0.1
-0.2
+0.1
carbon source
Starch from potato (C)
+0.2
-0.0
-0.2
-0.1
-0.0
carbon source
B-glucan from yeast (C)
+0.0
+0.2
-0.2
-0.1
-0.0
carbon source
polygalacturonic (ultrapure); filtered 2.5 mg/ml (C)
+0.2
+0.1
-0.1
-0.1
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.0
+0.2
+0.1
-0.1
-0.3
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.4
+0.1
-0.1
-0.3
carbon source
Galactan from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.2
+0.1
-0.1
-0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.0
+0.2
+0.1
-0.1
-0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.0
+0.3
-0.1
-0.1
-0.1
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.2
+0.1
+0.3
+0.0
-0.2
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.3
-0.1
+0.1
+0.2
+0.2
carbon source
polygalacturonic; autoclaved 2.5 mg/ml (C)
-0.1
+0.1
+0.3
-0.2
+0.0
carbon source
Galactan from Potato (C)
+0.2
-0.1
-0.2
-0.1
+0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.2
+0.2
+0.2
-0.1
-0.2
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.1
+0.3
+0.4
-0.0
-0.4
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
-0.0
-0.0
+0.1
+0.3
-0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
+0.2
-0.1
+0.3
+0.1
-0.1
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.0
+0.2
+0.2
+0.1
-0.1
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