Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS04030 and ABI39_RS04035 are separated by 15 nucleotidesABI39_RS04035 and ABI39_RS04040 are separated by 97 nucleotidesABI39_RS04040 and ABI39_RS04045 are separated by 22 nucleotidesABI39_RS04045 and ABI39_RS04050 are separated by 152 nucleotides ABI39_RS04030: ABI39_RS04030 - beta-galactosidase, at 1,132,819 to 1,135,659 _RS04030 ABI39_RS04035: ABI39_RS04035 - glycosyl hydrolase 115 family protein, at 1,135,675 to 1,138,257 _RS04035 ABI39_RS04040: ABI39_RS04040 - RagB/SusD family nutrient uptake outer membrane protein, at 1,138,355 to 1,140,052 _RS04040 ABI39_RS04045: ABI39_RS04045 - TonB-dependent receptor, at 1,140,075 to 1,143,401 _RS04045 ABI39_RS04050: ABI39_RS04050 - helix-turn-helix domain-containing protein, at 1,143,554 to 1,146,433 _RS04050
Group Condition ABI39_RS04030 ABI39_RS04035 ABI39_RS04040 ABI39_RS04045 ABI39_RS04050
nitrogen source L-Asparagine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.2 -0.1 -0.1 -0.1 -0.2
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -0.1 -0.1 -0.0 -0.2
carbon source D-Mannose 2.5 mg/ml (C) -0.2 -0.0 -0.0 -0.0 -0.3
carbon source B-glucan from yeast (C) +0.0 +0.0 -0.3 -0.1 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.1 -0.1 -0.4
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.2 -0.0 -0.2 -0.2 -0.2
carbon source D-Fructose 2.5 mg/ml (C) -0.2 -0.0 +0.1 -0.1 -0.2
carbon source Pectin from citrus peel; autoclaved 2.5 mg/ml (C) +0.0 +0.1 -0.0 -0.3 -0.2
carbon source N-acetylneuraminic (C) -0.1 +0.1 -0.0 -0.1 -0.2
carbon source (+)-Arabinogalactan (C) -0.2 +0.0 -0.1 +0.1 -0.2
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.2 -0.1 -0.2 -0.2 -0.0
carbon source Amylopectin from Potato (C) -0.2 -0.1 +0.2 -0.0 -0.1
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) -0.1 +0.0 -0.1 -0.2 +0.1
carbon source Starch from potato (C) +0.2 -0.0 -0.2 -0.1 -0.0
carbon source B-glucan from yeast (C) +0.0 +0.2 -0.2 -0.1 -0.0
carbon source polygalacturonic (ultrapure); filtered 2.5 mg/ml (C) +0.2 +0.1 -0.1 -0.1 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.0 +0.2 +0.1 -0.1 -0.3
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.4 +0.1 -0.1 -0.3
carbon source Galactan from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.2 +0.1 -0.1 -0.1
carbon source a-Cyclodextrin 2.5 mg/ml (C) -0.0 +0.2 +0.1 -0.1 -0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.0 +0.3 -0.1 -0.1 -0.1
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.2 +0.1 +0.3 +0.0 -0.2
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.3 -0.1 +0.1 +0.2 +0.2
carbon source polygalacturonic; autoclaved 2.5 mg/ml (C) -0.1 +0.1 +0.3 -0.2 +0.0
carbon source Galactan from Potato (C) +0.2 -0.1 -0.2 -0.1 +0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.2 +0.2 +0.2 -0.1 -0.2
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) -0.1 +0.3 +0.4 -0.0 -0.4
nitrogen source L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen -0.0 -0.0 +0.1 +0.3 -0.1
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) +0.2 -0.1 +0.3 +0.1 -0.1
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.0 +0.2 +0.2 +0.1 -0.1
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