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Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS03510 and ABI39_RS03515 are separated by 162 nucleotides
ABI39_RS03515 and ABI39_RS03520 overlap by 1 nucleotides
ABI39_RS03520 and ABI39_RS03525 are separated by 208 nucleotides
ABI39_RS03525 and ABI39_RS03530 are separated by 115 nucleotides
ABI39_RS03510: ABI39_RS03510 - ATP-binding protein, at 1,024,949 to 1,025,233
_RS03510
ABI39_RS03515: ABI39_RS03515 - iron-containing alcohol dehydrogenase, at 1,025,396 to 1,026,568
_RS03515
ABI39_RS03520: ABI39_RS03520 - creatininase family protein, at 1,026,568 to 1,027,323
_RS03520
ABI39_RS03525: ABI39_RS03525 - hypothetical protein, at 1,027,532 to 1,027,798
_RS03525
ABI39_RS03530: ABI39_RS03530 - DUF4221 domain-containing protein, at 1,027,914 to 1,029,068
_RS03530
Group
Condition
ABI39
_RS03510
ABI39
_RS03515
ABI39
_RS03520
ABI39
_RS03525
ABI39
_RS03530
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-2.5
-0.4
-0.0
+0.1
+0.1
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-1.4
-0.2
-0.1
-0.3
-0.2
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
-1.7
-0.5
+0.3
-0.0
-0.2
carbon source
Mucin from porcine stomach type III; autoclaved 2.5 mg/ml (C)
-1.0
-0.4
-0.1
-0.0
+0.0
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.1
-0.7
-0.4
-0.6
+0.0
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.8
-0.6
+0.1
-0.3
+0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-1.3
+0.4
-0.0
-0.4
-0.0
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
+0.1
-0.8
+0.4
-0.8
-0.1
carbon source
Pectin from apple; autoclaved 2.5 mg/ml (C)
-0.7
-0.5
+0.1
+0.1
+0.1
carbon source
Dextrin from potato starch; autoclaved 2.5 mg/ml (C)
-1.1
-0.2
-0.0
+0.3
+0.1
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
-0.7
-0.0
-0.3
+0.4
+0.1
carbon source
polygalacturonic (ultrapure); autoclaved 2.5 mg/ml (C)
-0.7
-0.3
+0.3
+0.3
-0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
-0.9
+0.1
-0.1
+0.6
-0.1
carbon source
D-Glucosamine Hydrochloride 2.5 mg/ml (C)
+0.2
-0.6
-0.2
+0.3
+0.0
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.7
+0.1
+0.5
-0.2
-0.0
carbon source
Pectin from citrus peel; autoclaved 2.5 mg/ml (C)
+0.6
-0.6
+0.2
-0.3
-0.1
carbon source
amylopectin from maize (C)
-0.7
+0.1
-0.0
+0.7
+0.1
carbon source
Pectin from apple; filtered 1 mg/ml (C)
+0.4
-0.4
-0.2
+0.3
+0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.4
-0.4
-0.3
+0.4
+0.3
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.2
+0.3
-0.4
+0.4
+0.0
carbon source
Fructose-6-phosphate (C)
+0.8
-0.2
+0.3
-0.3
+0.1
carbon source
Galactan from Potato; filtered 2.5 mg/ml (C)
+0.6
-0.4
+0.3
+0.3
-0.1
carbon source
B-glucan from yeast (C)
+0.9
-0.3
+0.1
+0.1
+0.2
carbon source
NAG (C)
+0.8
-0.2
+0.2
+0.2
+0.1
carbon source
amylopectin from maize (C)
+0.9
-0.2
+0.4
-0.1
+0.1
carbon source
beta-Cyclodextrin (C)
+0.8
-0.2
+0.2
+0.2
+0.2
carbon source
D-Fructose (C)
+0.9
-0.1
+0.3
+0.1
-0.0
carbon source
D-Fructose (C)
+0.8
-0.1
+0.3
+0.1
+0.2
carbon source
Galactan from Potato (C)
+1.5
-0.5
+0.4
+0.0
+0.0
nitrogen source
L-Glutamic (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
+0.5
+0.7
-0.0
+0.3
+0.0
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