Fitness for 5 genes in Phocaeicola dorei CL03T12C01

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500 ntABI39_RS03220 and ABI39_RS03225 overlap by 4 nucleotidesABI39_RS03225 and ABI39_RS03230 are separated by 121 nucleotidesABI39_RS03230 and ABI39_RS21650 are separated by 202 nucleotidesABI39_RS21650 and ABI39_RS03240 are separated by 69 nucleotides ABI39_RS03220: ABI39_RS03220 - RNA polymerase sigma-70 factor, at 936,637 to 937,164 _RS03220 ABI39_RS03225: ABI39_RS03225 - FecR domain-containing protein, at 937,161 to 938,171 _RS03225 ABI39_RS03230: ABI39_RS03230 - Gfo/Idh/MocA family oxidoreductase, at 938,293 to 939,534 _RS03230 ABI39_RS21650: ABI39_RS21650 - phage integrase SAM-like domain-containing protein, at 939,737 to 939,958 _RS21650 ABI39_RS03240: ABI39_RS03240 - AraC family transcriptional regulator, at 940,028 to 940,957 _RS03240
Group Condition ABI39_RS03220 ABI39_RS03225 ABI39_RS03230 ABI39_RS21650 ABI39_RS03240
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.1 -1.4 -0.2 -4.7 -0.5
carbon source Amylopectin from Potato (C) +0.7 -0.6 +0.1 -4.2 +0.0
carbon source Amylopectin from Potato; autoclaved 2.5 mg/ml (C) +0.5 -1.2 -0.5 -2.0 -0.3
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.4 -0.7 -0.3 -2.4 -0.0
carbon source amylopectin from maize; autoclaved 2.5 mg/ml (C) +0.4 -0.8 -0.1 -2.1 -0.1
carbon source Amylopectin from Potato (C) +0.4 -0.3 +0.3 -2.7 +0.1
carbon source D-Mannose 2.5 mg/ml (C) -0.5 -0.1 -0.3 -1.0 -0.0
carbon source Galactan from Potato (C) -0.5 -0.2 +0.1 -1.0 -0.2
carbon source Starch soluble; autoclaved 2.5 mg/ml (C) +0.5 -0.9 -0.3 -1.2 +0.2
carbon source a-Cyclodextrin 2.5 mg/ml (C) +0.1 -0.8 -0.1 -1.2 +0.2
carbon source beta-Cyclodextrin 2.5 mg/ml (C) +0.3 -0.3 -0.4 -1.1 -0.2
carbon source Galactan from Potato (C) -0.1 +0.0 -0.1 -1.2 -0.3
carbon source amylopectin from maize (C) +0.7 -0.5 -0.3 -1.2 -0.1
carbon source B-glucan from yeast (C) +0.1 +0.0 +0.0 -1.3 -0.3
carbon source a-Cyclodextrin (C) +0.4 -0.1 -0.1 -1.1 -0.2
carbon source B-glucan from yeast; autoclaved 2.5 mg/ml (C) +0.4 -0.4 -0.3 -0.7 -0.0
carbon source B-glucan from yeast (C) +0.4 -0.3 -0.1 -0.8 -0.1
carbon source b-Glucan from Beet (1,2-b-Glucan) (C) -0.3 +0.5 +0.2 -1.2 -0.1
carbon source Beta-Lactose 2.5 mg/ml (C) +0.3 -0.4 +0.1 -0.7 +0.3
carbon source b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C) +0.3 +0.7 +0.1 -1.1 -0.3
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) -0.7 -0.4 +0.1 +0.8 +0.0
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.5 -0.5 -0.2 +1.1 -0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.0 -0.7 -0.2 +0.8 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) -0.3 -0.5 -0.2 +1.1 +0.1
carbon source Xylan from Beechwood; autoclaved 2.5 mg/ml (C) +0.5 -1.0 -0.3 +0.9 +0.2
carbon source Pectic galactan from potato; filtered 2.5 mg/ml (C) -0.2 -0.4 -0.0 +1.2 -0.2
carbon source Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C) -0.6 +0.7 -0.3 +0.8 -0.1
carbon source Pectin from apple; filtered 1 mg/ml (C) -0.4 -0.4 -0.0 +1.5 -0.0
carbon source Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C) +0.3 -0.2 -0.5 +1.3 +0.1
carbon source Pectic galactan from potato; autoclaved 2.5 mg/ml (C) +0.1 -0.1 -0.3 +1.3 -0.1
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