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Protein
Homologs
Fitness for 5 genes in
Phocaeicola dorei CL03T12C01
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
ABI39_RS03220 and ABI39_RS03225 overlap by 4 nucleotides
ABI39_RS03225 and ABI39_RS03230 are separated by 121 nucleotides
ABI39_RS03230 and ABI39_RS21650 are separated by 202 nucleotides
ABI39_RS21650 and ABI39_RS03240 are separated by 69 nucleotides
ABI39_RS03220: ABI39_RS03220 - RNA polymerase sigma-70 factor, at 936,637 to 937,164
_RS03220
ABI39_RS03225: ABI39_RS03225 - FecR domain-containing protein, at 937,161 to 938,171
_RS03225
ABI39_RS03230: ABI39_RS03230 - Gfo/Idh/MocA family oxidoreductase, at 938,293 to 939,534
_RS03230
ABI39_RS21650: ABI39_RS21650 - phage integrase SAM-like domain-containing protein, at 939,737 to 939,958
_RS21650
ABI39_RS03240: ABI39_RS03240 - AraC family transcriptional regulator, at 940,028 to 940,957
_RS03240
Group
Condition
ABI39
_RS03220
ABI39
_RS03225
ABI39
_RS03230
ABI39
_RS21650
ABI39
_RS03240
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.1
-1.4
-0.2
-4.7
-0.5
carbon source
Amylopectin from Potato (C)
+0.7
-0.6
+0.1
-4.2
+0.0
carbon source
Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
+0.5
-1.2
-0.5
-2.0
-0.3
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.4
-0.7
-0.3
-2.4
-0.0
carbon source
amylopectin from maize; autoclaved 2.5 mg/ml (C)
+0.4
-0.8
-0.1
-2.1
-0.1
carbon source
Amylopectin from Potato (C)
+0.4
-0.3
+0.3
-2.7
+0.1
carbon source
D-Mannose 2.5 mg/ml (C)
-0.5
-0.1
-0.3
-1.0
-0.0
carbon source
Galactan from Potato (C)
-0.5
-0.2
+0.1
-1.0
-0.2
carbon source
Starch soluble; autoclaved 2.5 mg/ml (C)
+0.5
-0.9
-0.3
-1.2
+0.2
carbon source
a-Cyclodextrin 2.5 mg/ml (C)
+0.1
-0.8
-0.1
-1.2
+0.2
carbon source
beta-Cyclodextrin 2.5 mg/ml (C)
+0.3
-0.3
-0.4
-1.1
-0.2
carbon source
Galactan from Potato (C)
-0.1
+0.0
-0.1
-1.2
-0.3
carbon source
amylopectin from maize (C)
+0.7
-0.5
-0.3
-1.2
-0.1
carbon source
B-glucan from yeast (C)
+0.1
+0.0
+0.0
-1.3
-0.3
carbon source
a-Cyclodextrin (C)
+0.4
-0.1
-0.1
-1.1
-0.2
carbon source
B-glucan from yeast; autoclaved 2.5 mg/ml (C)
+0.4
-0.4
-0.3
-0.7
-0.0
carbon source
B-glucan from yeast (C)
+0.4
-0.3
-0.1
-0.8
-0.1
carbon source
b-Glucan from Beet (1,2-b-Glucan) (C)
-0.3
+0.5
+0.2
-1.2
-0.1
carbon source
Beta-Lactose 2.5 mg/ml (C)
+0.3
-0.4
+0.1
-0.7
+0.3
carbon source
b-Glucan from Beet (1,2-b-Glucan); filtered 2.5 mg/ml (C)
+0.3
+0.7
+0.1
-1.1
-0.3
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
-0.7
-0.4
+0.1
+0.8
+0.0
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.5
-0.5
-0.2
+1.1
-0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.0
-0.7
-0.2
+0.8
+0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
-0.3
-0.5
-0.2
+1.1
+0.1
carbon source
Xylan from Beechwood; autoclaved 2.5 mg/ml (C)
+0.5
-1.0
-0.3
+0.9
+0.2
carbon source
Pectic galactan from potato; filtered 2.5 mg/ml (C)
-0.2
-0.4
-0.0
+1.2
-0.2
carbon source
Rhamnogalacturonan from soy bean pectic fibre; autoclaved 2.5 mg/ml (C)
-0.6
+0.7
-0.3
+0.8
-0.1
carbon source
Pectin from apple; filtered 1 mg/ml (C)
-0.4
-0.4
-0.0
+1.5
-0.0
carbon source
Arabinoxylan (Rye Flour); autoclaved 2.5 mg/ml (C)
+0.3
-0.2
-0.5
+1.3
+0.1
carbon source
Pectic galactan from potato; autoclaved 2.5 mg/ml (C)
+0.1
-0.1
-0.3
+1.3
-0.1
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